Topological autoencoders

M Moor, M Horn, B Rieck… - … conference on machine …, 2020 - proceedings.mlr.press
We propose a novel approach for preserving topological structures of the input space in
latent representations of autoencoders. Using persistent homology, a technique from …

[HTML][HTML] New guidance for using t-SNE: Alternative defaults, hyperparameter selection automation, and comparative evaluation

R Gove, L Cadalzo, N Leiby, JM Singer, A Zaitzeff - Visual Informatics, 2022 - Elsevier
We present new guidelines for choosing hyperparameters for t-SNE and an evaluation
comparing these guidelines to current ones. These guidelines include a proposed …

[HTML][HTML] Learning prognostic models using a mixture of biclustering and triclustering: Predicting the need for non-invasive ventilation in Amyotrophic Lateral Sclerosis

DF Soares, R Henriques, M Gromicho… - Journal of Biomedical …, 2022 - Elsevier
Longitudinal cohort studies to study disease progression generally combine temporal
features produced under periodic assessments (clinical follow-up) with static features …

Predicting user preferences of dimensionality reduction embedding quality

C Morariu, A Bibal, R Cutura, B Frénay… - IEEE Transactions on …, 2022 - ieeexplore.ieee.org
A plethora of dimensionality reduction techniques have emerged over the past decades,
leaving researchers and analysts with a wide variety of choices for reducing their data, all …

Integrating constraints into dimensionality reduction for visualization: A survey

VM Vu, A Bibal, B Frénay - IEEE Transactions on Artificial …, 2022 - ieeexplore.ieee.org
This survey reviews and organizes existing methods for integrating constraints into
dimensionality reduction (DR). In the world of high-dimensional data, DR methods help to …

Context-based evaluation of dimensionality reduction algorithms—Experiments and statistical significance analysis

A Ghosh, M Nashaat, J Miller, S Quader - ACM Transactions on …, 2021 - dl.acm.org
Dimensionality reduction is a commonly used technique in data analytics. Reducing the
dimensionality of datasets helps not only with managing their analytical complexity but also …

Viva: semi-supervised visualization via variational autoencoders

S An, S Hong, J Sun - 2020 IEEE International Conference on …, 2020 - ieeexplore.ieee.org
Visualizing latent embeddings is a popular approach to explain classification models,
including deep neural networks. However, existing visualization methods such as t …

Interpretable Dimensionality Reduction by Feature Preserving Manifold Approximation and Projection

Y Yang, H Sun, J Gong, D Yu - arxiv preprint arxiv:2211.09321, 2022 - arxiv.org
Nonlinear dimensionality reduction lacks interpretability due to the absence of source
features in low-dimensional embedding space. We propose an interpretable method …

VisExPreS: A visual interactive toolkit for user-driven evaluations of embeddings

A Ghosh, M Nashaat, J Miller… - IEEE Transactions on …, 2020 - ieeexplore.ieee.org
Although popularly used in big-data analytics, dimensionality reduction is a complex, black-
box technique whose outcome is difficult to interpret and evaluate. In recent years, a number …

DumbleDR: Predicting User Preferences of Dimensionality Reduction Projection Quality

C Morariu, A Bibal, R Cutura, B Frénay… - arxiv preprint arxiv …, 2021 - arxiv.org
A plethora of dimensionality reduction techniques have emerged over the past decades,
leaving researchers and analysts with a wide variety of choices for reducing their data, all …