progressiveMauve: multiple genome alignment with gene gain, loss and rearrangement
Background Multiple genome alignment remains a challenging problem. Effects of
recombination including rearrangement, segmental duplication, gain, and loss can create a …
recombination including rearrangement, segmental duplication, gain, and loss can create a …
Macronuclear Genome Sequence of the Ciliate Tetrahymena thermophila, a Model Eukaryote
The ciliate Tetrahymena thermophila is a model organism for molecular and cellular biology.
Like other ciliates, this species has separate germline and soma functions that are …
Like other ciliates, this species has separate germline and soma functions that are …
Genome sequence and comparative analysis of the model rodent malaria parasite Plasmodium yoelii yoelii
Species of malaria parasite that infect rodents have long been used as models for malaria
disease research. Here we report the whole-genome shotgun sequence of one species …
disease research. Here we report the whole-genome shotgun sequence of one species …
A significant fraction of conserved noncoding DNA in human and mouse consists of predicted matrix attachment regions
Noncoding DNA in the human–mouse orthologous intergenic regions contains 'islands' of
conserved sequences, the functions of which remain largely unknown. We hypothesized that …
conserved sequences, the functions of which remain largely unknown. We hypothesized that …
The genome of model malaria parasites, and comparative genomics
The field of comparative genomics of malaria parasites has recently come of age with the
completion of the whole genome sequences of the human malaria parasite Plasmodium …
completion of the whole genome sequences of the human malaria parasite Plasmodium …
A periodic pattern of mRNA secondary structure created by the genetic code
SA Shabalina, AY Ogurtsov… - Nucleic acids …, 2006 - academic.oup.com
Single-stranded mRNA molecules form secondary structures through complementary self-
interactions. Several hypotheses have been proposed on the relationship between the …
interactions. Several hypotheses have been proposed on the relationship between the …
Expansion of the human μ-opioid receptor gene architecture: novel functional variants
SA Shabalina, DV Zaykin, P Gris… - Human molecular …, 2009 - academic.oup.com
The μ-opioid receptor (OPRM1) is the principal receptor target for both endogenous and
exogenous opioid analgesics. There are substantial individual differences in human …
exogenous opioid analgesics. There are substantial individual differences in human …
Prosurvival long noncoding RNA PINCR regulates a subset of p53 targets in human colorectal cancer cells by binding to Matrin 3
Thousands of long noncoding RNAs (lncRNAs) have been discovered, yet the function of
the vast majority remains unclear. Here, we show that a p53-regulated lncRNA which we …
the vast majority remains unclear. Here, we show that a p53-regulated lncRNA which we …
Variation in human chromosome 21 ribosomal RNA genes characterized by TAR cloning and long-read sequencing
Despite the key role of the human ribosome in protein biosynthesis, little is known about the
extent of sequence variation in ribosomal DNA (rDNA) or its pre-rRNA and rRNA products …
extent of sequence variation in ribosomal DNA (rDNA) or its pre-rRNA and rRNA products …
Continuing Evolution of Burkholderia mallei Through Genome Reduction and Large-Scale Rearrangements
L Losada, CM Ronning, D DeShazer… - Genome biology and …, 2010 - academic.oup.com
Burkholderia mallei (Bm), the causative agent of the predominately equine disease
glanders, is a genetically uniform species that is very closely related to the much more …
glanders, is a genetically uniform species that is very closely related to the much more …