Genetic circuit design automation with Cello 2.0

TS Jones, SMD Oliveira, CJ Myers, CA Voigt… - Nature protocols, 2022 - nature.com
Cells interact with their environment, communicate among themselves, track time and make
decisions through functions controlled by natural regulatory genetic circuits consisting of …

[HTML][HTML] New synthetic biology tools for metabolic control

X Lv, A Hueso-Gil, X Bi, Y Wu, Y Liu, L Liu… - Current Opinion in …, 2022 - Elsevier
In industrial bioprocesses, microbial metabolism dictates the product yields, and therefore,
our capacity to control it has an enormous potential to help us move towards a bio-based …

Systematic mining of the human microbiome identifies antimicrobial peptides with diverse activity spectra

AM King, Z Zhang, E Glassey, P Siuti, J Clardy… - Nature …, 2023 - nature.com
Human-associated bacteria secrete modified peptides to control host physiology and
remodel the microbiota species composition. Here we scanned 2,229 Human Microbiome …

Genetic circuit design automation for yeast

Y Chen, S Zhang, EM Young, TS Jones… - Nature …, 2020 - nature.com
Cells can be programmed to monitor and react to their environment using genetic circuits.
Design automation software maps a desired circuit function to a DNA sequence, a process …

Partitioning of a 2-bit hash function across 66 communicating cells

JP Padmakumar, JJ Sun, W Cho, Y Zhou… - Nature Chemical …, 2024 - nature.com
Powerful distributed computing can be achieved by communicating cells that individually
perform simple operations. Here, we report design software to divide a large genetic circuit …

4-bit adhesion logic enables universal multicellular interface patterning

H Kim, DJ Skinner, DS Glass, AE Hamby, BAR Stuart… - Nature, 2022 - nature.com
Multicellular systems, from bacterial biofilms to human organs, form interfaces (or
boundaries) between different cell collectives to spatially organize versatile functions,. The …

Designing biological circuits: synthetic biology within the operon model and beyond

MA English, RV Gayet, JJ Collins - Annual Review of …, 2021 - annualreviews.org
In 1961, Jacob and Monod proposed the operon model of gene regulation. At the model's
core was the modular assembly of regulators, operators, and structural genes. To illustrate …

Cellular checkpoint control using programmable sequential logic

LB Andrews, AAK Nielsen, CA Voigt - Science, 2018 - science.org
INTRODUCTION Modern computing is based on sequential logic, in which the state of a
circuit depends both on the present inputs as well as the input history (memory) …

[PDF][PDF] Living electronics: A catalogue of engineered living electronic components

JT Atkinson, MS Chavez, CM Niman… - Microbial …, 2023 - Wiley Online Library
Biology leverages a range of electrical phenomena to extract and store energy, control
molecular reactions and enable multicellular communication. Microbes, in particular, have …

Redesign of an Escherichia coli Nissle treatment for phenylketonuria using insulated genomic landing pads and genetic circuits to reduce burden

AJ Triassi, BD Fields, CE Monahan, JM Means, Y Park… - Cell Systems, 2023 - cell.com
To build therapeutic strains, Escherichia coli Nissle (EcN) have been engineered to express
antibiotics, toxin-degrading enzymes, immunoregulators, and anti-cancer chemotherapies …