Challenges and opportunities for digital twins in precision medicine from a complex systems perspective

M De Domenico, L Allegri, G Caldarelli, V d'Andrea… - npj Digital …, 2025 - nature.com
Digital twins (DTs) in precision medicine are increasingly viable, propelled by extensive data
collection and advancements in artificial intelligence (AI), alongside traditional biomedical …

Pillars of biology: Boolean modeling of gene-regulatory networks

J Thakar - Journal of Theoretical Biology, 2024 - Elsevier
Boolean modeling is a mathematical modeling framework used for defining and studying
gene-regulatory networks (GRNs). It serves as a means to develop mechanistic models …

[KIRJA][B] Boolean Networks as Predictive Models of Emergent Biological Behaviors

JC Rozum, C Campbell, E Newby, FSF Nasrollahi… - 2024 - cambridge.org
Interacting biological systems at all organizational levels display emergent behavior.
Modeling these systems is made challenging by the number and variety of biological …

Boolean networks as predictive models of emergent biological behaviors

JC Rozum, C Campbell, E Newby… - ar** the attractor landscape of Boolean networks
VG Trinh, KH Park, S Pastva, JC Rozum - bioRxiv, 2024 - biorxiv.org
Boolean networks are popular dynamical models of cellular processes in systems biology.
Their attractors model phenotypes that arise from the interplay of key regulatory subcircuits …

Phenotype control of partially specified boolean networks

N Beneš, L Brim, S Pastva, D Šafránek… - … Methods in Systems …, 2023 - Springer
Abstract Partially specified Boolean networks (PSBNs) represent a promising framework for
the qualitative modelling of biological systems in which the logic of interactions is not …