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The evolution of tumour phylogenetics: principles and practice
Rapid advances in high-throughput sequencing and a growing realization of the importance
of evolutionary theory to cancer genomics have led to a proliferation of phylogenetic studies …
of evolutionary theory to cancer genomics have led to a proliferation of phylogenetic studies …
Deterministic evolutionary trajectories influence primary tumor growth: TRACERx renal
The evolutionary features of clear-cell renal cell carcinoma (ccRCC) have not been
systematically studied to date. We analyzed 1,206 primary tumor regions from 101 patients …
systematically studied to date. We analyzed 1,206 primary tumor regions from 101 patients …
[HTML][HTML] Tracking cancer evolution reveals constrained routes to metastases: TRACERx renal
Clear-cell renal cell carcinoma (ccRCC) exhibits a broad range of metastatic phenotypes
that have not been systematically studied to date. Here, we analyzed 575 primary and 335 …
that have not been systematically studied to date. Here, we analyzed 575 primary and 335 …
Algorithmic methods to infer the evolutionary trajectories in cancer progression
The genomic evolution inherent to cancer relates directly to a renewed focus on the
voluminous next-generation sequencing data and machine learning for the inference of …
voluminous next-generation sequencing data and machine learning for the inference of …
Genomic Underpinnings of Tumor Behavior in In Situ and Early Lung Adenocarcinoma
Rationale: We have a limited understanding of the molecular underpinnings of early
adenocarcinoma (ADC) progression. We hypothesized that the behavior of early ADC can …
adenocarcinoma (ADC) progression. We hypothesized that the behavior of early ADC can …
HyperHMM: efficient inference of evolutionary and progressive dynamics on hypercubic transition graphs
MT Moen, IG Johnston - Bioinformatics, 2023 - academic.oup.com
Motivation The evolution of bacterial drug resistance and other features in biology, the
progression of cancer and other diseases and a wide range of broader questions can often …
progression of cancer and other diseases and a wide range of broader questions can often …
Analysis of single circulating tumor cells in renal cell carcinoma reveals phenotypic heterogeneity and genomic alterations related to progression
Circulating tumor cells (CTCs) are promising biomarkers for prognosis, therapeutic response
prediction, and treatment monitoring in cancer patients. Despite its epithelial origin, renal …
prediction, and treatment monitoring in cancer patients. Despite its epithelial origin, renal …
Modeling cumulative biological phenomena with suppes-bayes causal networks
Several diseases related to cell proliferation are characterized by the accumulation of
somatic DNA changes, with respect to wild-type conditions. Cancer and HIV are 2 common …
somatic DNA changes, with respect to wild-type conditions. Cancer and HIV are 2 common …
Indoor radon exposure increases tumor mutation burden in never-smoker patients with lung adenocarcinoma
SM Lim, JW Choi, MH Hong, D Jung, CY Lee, SY Park… - Lung Cancer, 2019 - Elsevier
Objectives Radon, a natural radiation, is the leading environmental cause of lung cancer in
never-smokers. However, the radon exposure impact on the mutational landscape and …
never-smokers. However, the radon exposure impact on the mutational landscape and …
Copy number alterations analysis of primary tumor tissue and circulating tumor cells from patients with early-stage triple negative breast cancer
Triple negative breast cancer (TNBC) is characterized by clinical aggressiveness, lack of
recognized target therapy, and a dismal patient prognosis. Several studies addressed …
recognized target therapy, and a dismal patient prognosis. Several studies addressed …