Map** epigenetic modifications by sequencing technologies

X Chen, H Xu, X Shu, CX Song - Cell Death & Differentiation, 2025 - nature.com
The “epigenetics” concept was first described in 1942. Thus far, chemical modifications on
histones, DNA, and RNA have emerged as three important building blocks of epigenetic …

[HTML][HTML] Gene regulation in the immediate-early response process

S Bahrami, F Drabløs - Advances in biological regulation, 2016 - Elsevier
Immediate-early genes (IEGs) can be activated and transcribed within minutes after
stimulation, without the need for de novo protein synthesis, and they are stimulated in …

A double take on bivalent promoters

P Voigt, WW Tee, D Reinberg - Genes & development, 2013 - genesdev.cshlp.org
Histone modifications and chromatin-associated protein complexes are crucially involved in
the control of gene expression, supervising cell fate decisions and differentiation. Many …

The Polycomb complex PRC2 and its mark in life

R Margueron, D Reinberg - Nature, 2011 - nature.com
Polycomb group proteins maintain the gene-expression pattern of different cells that is set
during early development by regulating chromatin structure. In mammals, two main …

Cancer epigenetics reaches mainstream oncology

M Rodríguez-Paredes, M Esteller - Nature medicine, 2011 - nature.com
Epigenetics is one of the most promising and expanding fields in the current biomedical
research landscape. Since the inception of epigenetics in the 1940s, the discoveries …

The relationship between DNA methylation, genetic and expression inter-individual variation in untransformed human fibroblasts

JR Wagner, S Busche, B Ge, T Kwan, T Pastinen… - Genome biology, 2014 - Springer
Background DNA methylation plays an essential role in the regulation of gene expression.
While its presence near the transcription start site of a gene has been associated with …

diffReps: detecting differential chromatin modification sites from ChIP-seq data with biological replicates

L Shen, NY Shao, X Liu, I Maze, J Feng, EJ Nestler - PloS one, 2013 - journals.plos.org
ChIP-seq is increasingly being used for genome-wide profiling of histone modification
marks. It is of particular importance to compare ChIP-seq data of two different conditions …

[HTML][HTML] Histone arginine methylation

A Di Lorenzo, MT Bedford - FEBS letters, 2011 - Elsevier
Arginine methylation is a common posttranslational modification (PTM). This type of PTM
occurs on both nuclear and cytoplasmic proteins, and is particularly abundant on shuttling …

[HTML][HTML] Genome-nuclear lamina interactions regulate cardiac stem cell lineage restriction

A Poleshko, PP Shah, M Gupta, A Babu, MP Morley… - Cell, 2017 - cell.com
Progenitor cells differentiate into specialized cell types through coordinated expression of
lineage-specific genes and modification of complex chromatin configurations. We …

The role of DNA methylation and histone modifications in transcriptional regulation in humans

JL Miller, PA Grant - Epigenetics: Development and Disease, 2012 - Springer
Although the field of genetics has grown by leaps and bounds within the last decade due to
the completion and availability of the human genome sequence, transcriptional regulation …