Comparative analyses of gene co-expression networks: Implementations and applications in the study of evolution
Similarities and differences in the associations of biological entities among species can
provide us with a better understanding of evolutionary relationships. Often the evolution of …
provide us with a better understanding of evolutionary relationships. Often the evolution of …
Protein ensembles link genotype to phenotype
Classically, phenotype is what is observed, and genotype is the genetic makeup. Statistical
studies aim to project phenotypic likelihoods of genotypic patterns. The traditional genotype …
studies aim to project phenotypic likelihoods of genotypic patterns. The traditional genotype …
[HTML][HTML] Transcriptome-derived networks reconstruct distinct immune strategies to counteract fungal infection under different iron availability between Arabidopsis and …
Fe, an essential element for plants to sustain central biological functions, recently emerged
as a modulator of immunity. However, our understanding of the crosstalk between Fe and …
as a modulator of immunity. However, our understanding of the crosstalk between Fe and …
Link prediction based on community information and its parallelization
Link prediction refers to predicting the likelihood of the existence of an unknown link or a
future link based on the observed information. It plays an important role in complex network …
future link based on the observed information. It plays an important role in complex network …
An effective community-based link prediction model for improving accuracy in social networks
MM Iqbal, K Latha - Journal of Intelligent & Fuzzy Systems, 2022 - content.iospress.com
Link prediction plays a predominant role in complex network analysis. It indicates to
determine the probability of the presence of future links that depends on available …
determine the probability of the presence of future links that depends on available …
Experimental and In Silico Analysis of TEM β-Lactamase Adaptive Evolution
Multiple mutations often have non-additive (epistatic) phenotypic effects. Epistasis is of
fundamental biological relevance but is not well understood mechanistically. Adaptive …
fundamental biological relevance but is not well understood mechanistically. Adaptive …
Quantification of the resilience and vulnerability of HIV-1 native glycan shield at atomistic detail
Dense surface glycosylation on the HIV-1 envelope (Env) protein acts as a shield from the
adaptive immune system. However, the molecular complexity and flexibility of glycans make …
adaptive immune system. However, the molecular complexity and flexibility of glycans make …
Strong selection of the TLR2 coding region among the Lagomorpha suggests an evolutionary history that differs from other mammals
Toll-like receptors (TLRs) are one of the first lines of defense against pathogens and are
crucial for triggering an appropriate immune response. Among TLRs, TLR2 is functional in …
crucial for triggering an appropriate immune response. Among TLRs, TLR2 is functional in …
Evolutionary rewiring of the dynamic network underpinning allosteric epistasis in NS1 of influenza A virus
Viral proteins frequently mutate to evade or antagonize host innate immune responses, yet
the impact of these mutations on the molecular energy landscape remains unclear …
the impact of these mutations on the molecular energy landscape remains unclear …
Transcriptome-derived networks reconstruct distinct immune strategies under different iron availability between Arabidopsis and rice
A Garcia-Molina, H Martín-Cardoso, M Ribaya… - 2024 - researchsquare.com
Fe, an essential element for plants to sustain central biological functions, recently emerged
as a modulator of immunity. However, our understanding of the crosstalk between Fe and …
as a modulator of immunity. However, our understanding of the crosstalk between Fe and …