[HTML][HTML] The bright side of microbial dark matter: lessons learned from the uncultivated majority

L Solden, K Lloyd, K Wrighton - Current opinion in microbiology, 2016 - Elsevier
Highlights•Recent discoveries from metagenomics and single cell genomics.•Metabolic
features of the uncultivated majority.•Success stories of cultivating microbial dark …

Present and future of culturing bacteria

J Overmann, B Abt, J Sikorski - Annual review of microbiology, 2017 - annualreviews.org
The cultivation of bacteria is highly biased toward a few phylogenetic groups. Many of the
currently underexplored bacterial lineages likely have novel biosynthetic pathways and …

The invisible life inside plants: Deciphering the riddles of endophytic bacterial diversity

J Papik, M Folkmanova, M Polivkova-Majorova… - Biotechnology …, 2020 - Elsevier
Endophytic bacteria often promote plant growth and protect their host plant against
pathogens, herbivores, and abiotic stresses including drought, increased salinity or …

Cultivation of unculturable soil bacteria

VHT Pham, J Kim - Trends in biotechnology, 2012 - cell.com
Despite the abundance of bacterial species in soil, more than 99% of these species cannot
be cultured by traditional techniques. In addition, the less than 1% of bacteria that can be …

Microbial biogeography of 925 geothermal springs in New Zealand

JF Power, CR Carere, CK Lee, GLJ Wakerley… - Nature …, 2018 - nature.com
Geothermal springs are model ecosystems to investigate microbial biogeography as they
represent discrete, relatively homogenous habitats, are distributed across multiple …

Three Genomes from the Phylum Acidobacteria Provide Insight into the Lifestyles of These Microorganisms in Soils

NL Ward, JF Challacombe, PH Janssen… - Applied and …, 2009 - journals.asm.org
The complete genomes of three strains from the phylum Acidobacteria were compared.
Phylogenetic analysis placed them as a unique phylum. They share genomic traits with …

Assessing the complex sponge microbiota: core, variable and species-specific bacterial communities in marine sponges

S Schmitt, P Tsai, J Bell, J Fromont, M Ilan… - The ISME …, 2012 - academic.oup.com
Marine sponges are well known for their associations with highly diverse, yet very specific
and often highly similar microbiota. The aim of this study was to identify potential bacterial …

Oral biofilms: emerging concepts in microbial ecology

S Filoche, L Wong, CH Sissons - Journal of dental research, 2010 - journals.sagepub.com
Oral biofilms develop under a range of different conditions and different environments. This
review will discuss emerging concepts in microbial ecology and how they relate to oral …

Two Chloroflexi classes independently evolved the ability to persist on atmospheric hydrogen and carbon monoxide

ZF Islam, PRF Cordero, J Feng, YJ Chen… - The ISME …, 2019 - academic.oup.com
Most aerobic bacteria exist in dormant states within natural environments. In these states,
they endure adverse environmental conditions such as nutrient starvation by decreasing …

Cultivating the uncultured: limits, advances and future challenges

K Alain, J Querellou - Extremophiles, 2009 - Springer
Since the invention of the Petri dish, there have been continuous efforts to improve efficiency
in microbial cultivation. These efforts were devoted to the attainment for diverse growth …