The Skyline ecosystem: Informatics for quantitative mass spectrometry proteomics

LK Pino, BC Searle, JG Bollinger… - Mass spectrometry …, 2020 - Wiley Online Library
Skyline is a freely available, open‐source Windows client application for accelerating
targeted proteomics experimentation, with an emphasis on the proteomics and mass …

Circulating heart failure biomarkers beyond natriuretic peptides: review from the Biomarker Study Group of the Heart Failure Association (HFA), European Society of …

WC Meijers, A Bayes‐Genis, A Mebazaa… - European journal of …, 2021 - Wiley Online Library
New biomarkers are being evaluated for their ability to advance the management of patients
with heart failure. Despite a large pool of interesting candidate biomarkers, besides …

Vesiclepedia: a compendium for extracellular vesicles with continuous community annotation

H Kalra, RJ Simpson, H Ji, E Aikawa, P Altevogt… - PLoS …, 2012 - journals.plos.org
Extracellular vesicles (EVs) are membraneous vesicles released by a variety of cells into
their microenvironment. Recent studies have elucidated the role of EVs in intercellular …

[HTML][HTML] Parallel reaction monitoring for high resolution and high mass accuracy quantitative, targeted proteomics

AC Peterson, JD Russell, DJ Bailey… - Molecular & cellular …, 2012 - Elsevier
Selected reaction monitoring on a triple quadrupole mass spectrometer is currently
experiencing a renaissance within the proteomics community for its, as yet, unparalleled …

Towards a knowledge-based human protein atlas

M Uhlen, P Oksvold, L Fagerberg, E Lundberg… - Nature …, 2010 - nature.com
NATURE BIoTECHNoloGy volume 28 number 12 DeCember 2010 1249 the resulting
annotated protein expression. The annotated protein expression in the various cell types are …

ExoCarta 2012: database of exosomal proteins, RNA and lipids

S Mathivanan, CJ Fahner, GE Reid… - Nucleic acids …, 2012 - academic.oup.com
Exosomes are membraneous nanovesicles of endocytic origin released by most cell types
from diverse organisms; they play a critical role in cell–cell communication. ExoCarta …

Human protein reference database—2009 update

TS Keshava Prasad, R Goel, K Kandasamy… - Nucleic acids …, 2009 - academic.oup.com
Abstract Human Protein Reference Database (HPRD—http://www. hprd. org/), initially
described in 2003, is a database of curated proteomic information pertaining to human …

Exosomes: proteomic insights and diagnostic potential

RJ Simpson, JWE Lim, RL Moritz… - Expert review of …, 2009 - Taylor & Francis
Exosomes are 40–100-nm diameter membrane vesicles of endocytic origin that are
released by most cell types upon fusion of multivesicular bodies with the plasma membrane …

Selected reaction monitoring for quantitative proteomics: a tutorial

V Lange, P Picotti, B Domon… - Molecular systems …, 2008 - embopress.org
Systems biology relies on data sets in which the same group of proteins is consistently
identified and precisely quantified across multiple samples, a requirement that is only …

ExoCarta as a resource for exosomal research

RJ Simpson, H Kalra, S Mathivanan - Journal of extracellular …, 2012 - Taylor & Francis
Exosomes are a class of extracellular vesicles that are secreted by various cell types. Unlike
other extracellular vesicles (ectosomes and apoptotic blebs), exosomes are of endocytic …