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Universal rules and idiosyncratic features in tRNA identity
R Giegé, M Sissler, C Florentz - Nucleic acids research, 1998 - academic.oup.com
Correct expression of the genetic code at translation is directly correlated with tRNA identity.
This survey describes the molecular signals in tRNAs that trigger specific aminoacylations …
This survey describes the molecular signals in tRNAs that trigger specific aminoacylations …
The SsrA–SmpB system for protein tagging, directed degradation and ribosome rescue
AW Karzai, ED Roche, RT Sauer - Nature structural biology, 2000 - nature.com
Bacteria contain a remarkable RNA molecule—known alternatively as SsrA RNA, tmRNA, or
10Sa RNA—that acts both as a tRNA and as an mRNA to direct the modification of proteins …
10Sa RNA—that acts both as a tRNA and as an mRNA to direct the modification of proteins …
[HTML][HTML] Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure
An improved dynamic programming algorithm is reported for RNA secondary structure
prediction by free energy minimization. Thermodynamic parameters for the stabilities of …
prediction by free energy minimization. Thermodynamic parameters for the stabilities of …
The ClpXP and ClpAP proteases degrade proteins with carboxy-terminal peptide tails added by the SsrA-tagging system
S Gottesman, E Roche, YN Zhou… - Genes & …, 1998 - genesdev.cshlp.org
Interruption of translation in Escherichia coli can lead to the addition of an 11-residue
carboxy-terminal peptide tail to the nascent chain. This modification is mediated by SsrA …
carboxy-terminal peptide tail to the nascent chain. This modification is mediated by SsrA …
The tmRNA system for translational surveillance and ribosome rescue
SD Moore, RT Sauer - Annu. Rev. Biochem., 2007 - annualreviews.org
The tmRNA system performs translational surveillance and ribosome rescue in all
eubacteria and some eukaryotic organelles. This system intervenes when ribosomes read to …
eubacteria and some eukaryotic organelles. This system intervenes when ribosomes read to …
[HTML][HTML] SmpB, a unique RNA‐binding protein essential for the peptide‐tagging activity of SsrA (tmRNA)
AW Karzai, MM Susskind, RT Sauer - The EMBO journal, 1999 - embopress.org
In bacteria, SsrA RNA recognizes ribosomes stalled on defective messages and acts as a
tRNA and mRNA to mediate the addition of a short peptide tag to the C‐terminus of the …
tRNA and mRNA to mediate the addition of a short peptide tag to the C‐terminus of the …
Biology of trans-Translation
KC Keiler - Annu. Rev. Microbiol., 2008 - annualreviews.org
The trans-translation mechanism is a key component of multiple quality control pathways in
bacteria that ensure proteins are synthesized with high fidelity in spite of challenges such as …
bacteria that ensure proteins are synthesized with high fidelity in spite of challenges such as …
[HTML][HTML] SsrA‐mediated peptide tagging caused by rare codons and tRNA scarcity
ED Roche, RT Sauer - The EMBO journal, 1999 - embopress.org
SsrA RNA mediates the addition of a C‐terminal peptide tag (AANDENYAL AA) to bacterial
proteins translated from mRNAs without in‐frame stop codons. This process involves both …
proteins translated from mRNAs without in‐frame stop codons. This process involves both …
[HTML][HTML] Presence and location of modified nucleotides in Escherichia coli tmRNA: structural mimicry with tRNA acceptor branches
Escherichia coli tmRNA functions uniquely as both tRNA and mRNA and possesses
structural elements similar to canonical tRNAs. To test whether this mimicry extends to post …
structural elements similar to canonical tRNAs. To test whether this mimicry extends to post …
Proline Residues at the C Terminus of Nascent Chains Induce SsrA Tagging during Translation Termination* 210
CS Hayes, B Bose, RT Sauer - Journal of Biological Chemistry, 2002 - jbc.org
The SsrA or tmRNA quality control system relieves ribosome stalling and directs the addition
of a degradation tag to the C terminus of the nascent chain. In some instances, SsrA tagging …
of a degradation tag to the C terminus of the nascent chain. In some instances, SsrA tagging …