Universal rules and idiosyncratic features in tRNA identity

R Giegé, M Sissler, C Florentz - Nucleic acids research, 1998 - academic.oup.com
Correct expression of the genetic code at translation is directly correlated with tRNA identity.
This survey describes the molecular signals in tRNAs that trigger specific aminoacylations …

The SsrA–SmpB system for protein tagging, directed degradation and ribosome rescue

AW Karzai, ED Roche, RT Sauer - Nature structural biology, 2000 - nature.com
Bacteria contain a remarkable RNA molecule—known alternatively as SsrA RNA, tmRNA, or
10Sa RNA—that acts both as a tRNA and as an mRNA to direct the modification of proteins …

[HTML][HTML] Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure

DH Mathews, J Sabina, M Zuker, DH Turner - Journal of molecular biology, 1999 - Elsevier
An improved dynamic programming algorithm is reported for RNA secondary structure
prediction by free energy minimization. Thermodynamic parameters for the stabilities of …

The ClpXP and ClpAP proteases degrade proteins with carboxy-terminal peptide tails added by the SsrA-tagging system

S Gottesman, E Roche, YN Zhou… - Genes & …, 1998 - genesdev.cshlp.org
Interruption of translation in Escherichia coli can lead to the addition of an 11-residue
carboxy-terminal peptide tail to the nascent chain. This modification is mediated by SsrA …

The tmRNA system for translational surveillance and ribosome rescue

SD Moore, RT Sauer - Annu. Rev. Biochem., 2007 - annualreviews.org
The tmRNA system performs translational surveillance and ribosome rescue in all
eubacteria and some eukaryotic organelles. This system intervenes when ribosomes read to …

[HTML][HTML] SmpB, a unique RNA‐binding protein essential for the peptide‐tagging activity of SsrA (tmRNA)

AW Karzai, MM Susskind, RT Sauer - The EMBO journal, 1999 - embopress.org
In bacteria, SsrA RNA recognizes ribosomes stalled on defective messages and acts as a
tRNA and mRNA to mediate the addition of a short peptide tag to the C‐terminus of the …

Biology of trans-Translation

KC Keiler - Annu. Rev. Microbiol., 2008 - annualreviews.org
The trans-translation mechanism is a key component of multiple quality control pathways in
bacteria that ensure proteins are synthesized with high fidelity in spite of challenges such as …

[HTML][HTML] SsrA‐mediated peptide tagging caused by rare codons and tRNA scarcity

ED Roche, RT Sauer - The EMBO journal, 1999 - embopress.org
SsrA RNA mediates the addition of a C‐terminal peptide tag (AANDENYAL AA) to bacterial
proteins translated from mRNAs without in‐frame stop codons. This process involves both …

[HTML][HTML] Presence and location of modified nucleotides in Escherichia coli tmRNA: structural mimicry with tRNA acceptor branches

B Felden, K Hanawa, JF Atkins, H Himeno… - The EMBO …, 1998 - embopress.org
Escherichia coli tmRNA functions uniquely as both tRNA and mRNA and possesses
structural elements similar to canonical tRNAs. To test whether this mimicry extends to post …

Proline Residues at the C Terminus of Nascent Chains Induce SsrA Tagging during Translation Termination* 210

CS Hayes, B Bose, RT Sauer - Journal of Biological Chemistry, 2002 - jbc.org
The SsrA or tmRNA quality control system relieves ribosome stalling and directs the addition
of a degradation tag to the C terminus of the nascent chain. In some instances, SsrA tagging …