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Opportunities and challenges for machine learning-assisted enzyme engineering
Enzymes can be engineered at the level of their amino acid sequences to optimize key
properties such as expression, stability, substrate range, and catalytic efficiency─ or even to …
properties such as expression, stability, substrate range, and catalytic efficiency─ or even to …
Machine learning-guided protein engineering
Recent progress in engineering highly promising biocatalysts has increasingly involved
machine learning methods. These methods leverage existing experimental and simulation …
machine learning methods. These methods leverage existing experimental and simulation …
Engineered enzymes for the synthesis of pharmaceuticals and other high-value products
MT Reetz, G Qu, Z Sun - Nature Synthesis, 2024 - nature.com
Catalysis has a central role in organic synthetic methodology, especially in stereoselective
reactions. In many reactions, enantioselectivity is made possible through the use of chiral …
reactions. In many reactions, enantioselectivity is made possible through the use of chiral …
Engineered cytochrome P450 for direct arylalkene-to-ketone oxidation via highly reactive carbocation intermediates
Ketones are crucial intermediates in synthesis and frequent moieties in many products. The
direct regioselective synthesis of ketones from internal alkenes could simplify synthetic …
direct regioselective synthesis of ketones from internal alkenes could simplify synthetic …
Flexibility regulation of loops surrounding the tunnel entrance in cytochrome P450 enhanced substrate access substantially
In recent years, the engineering of flexible loops to improve enzyme properties has gained
attention in biocatalysis. Herein, we report a loop engineering strategy to improve the …
attention in biocatalysis. Herein, we report a loop engineering strategy to improve the …
Resha** substrate-binding pocket of leucine dehydrogenase for bidirectionally accessing structurally diverse substrates
T Wu, Y Wang, N Zhang, D Yin, Y Xu, Y Nie, X Mu - ACS Catalysis, 2022 - ACS Publications
Steric hindrance modification-based pocket resha** is an effective approach for enzyme–
substrate acceptance evolution. However, previous studies were limited to using the …
substrate acceptance evolution. However, previous studies were limited to using the …
Learning from protein engineering by deconvolution of multi‐mutational variants
This review analyzes a development in biochemistry, enzymology and biotechnology that
originally came as a surprise. Following the establishment of directed evolution of …
originally came as a surprise. Following the establishment of directed evolution of …
Choose your own adventure: A comprehensive database of reactions catalyzed by cytochrome P450 BM3 variants
Cytochrome P450 BM3 monooxygenase is the topic of extensive research as many
researchers have evolved this enzyme to generate a variety of products. However, the …
researchers have evolved this enzyme to generate a variety of products. However, the …
NMR-guided directed evolution
S Bhattacharya, EG Margheritis, K Takahashi… - Nature, 2022 - nature.com
Directed evolution is a powerful tool for improving existing properties and imparting
completely new functionalities to proteins,,–. Nonetheless, its potential in even small …
completely new functionalities to proteins,,–. Nonetheless, its potential in even small …
Counteraction of stability-activity trade-off of Nattokinase through flexible region shifting
J Luo, C Song, W Cui, L Han, Z Zhou - Food Chemistry, 2023 - Elsevier
The widespread trade-off between stability and activity severely limits enzyme evolution.
Although some progresses have been made to overcome this limitation, the counteraction …
Although some progresses have been made to overcome this limitation, the counteraction …