Hydroxyl groups in synthetic and natural-product-derived therapeutics: a perspective on a common functional group
J Cramer, CP Sager, B Ernst - Journal of medicinal chemistry, 2019 - ACS Publications
By forming extended hydrogen-bond networks, the contribution of hydroxyl groups to affinity
can reach several orders of magnitude. However, because of the high directionality of their …
can reach several orders of magnitude. However, because of the high directionality of their …
Protein crystallography for aspiring crystallographers or how to avoid pitfalls and traps in macromolecular structure determination
The number of macromolecular structures deposited in the Protein Data Bank now
approaches 100 000, with the vast majority of them determined by crystallographic methods …
approaches 100 000, with the vast majority of them determined by crystallographic methods …
Joint X-ray and neutron refinement with phenix. refine
PV Afonine, M Mustyakimov… - … Section D: Biological …, 2010 - journals.iucr.org
Approximately 85% of the structures deposited in the Protein Data Bank have been solved
using X-ray crystallography, making it the leading method for three-dimensional structure …
using X-ray crystallography, making it the leading method for three-dimensional structure …
Structure-based design of β-site APP cleaving enzyme 1 (BACE1) inhibitors for the treatment of Alzheimer's disease
J Yuan, S Venkatraman, Y Zheng… - Journal of medicinal …, 2013 - ACS Publications
The amyloid hypothesis asserts that excess production or reduced clearance of the amyloid-
β (Aβ) peptides in the brain initiates a sequence of events that ultimately lead to Alzheimer's …
β (Aβ) peptides in the brain initiates a sequence of events that ultimately lead to Alzheimer's …
A small nonrule of 3 compatible fragment library provides high hit rate of endothiapepsin crystal structures with various fragment chemotypes
H Köster, T Craan, S Brass, C Herhaus… - Journal of medicinal …, 2011 - ACS Publications
Druglike molecules are defined by Lipinski's rule of 5, to characterize fragment thresholds,
they have been reduced from 5 to 3 (Astex's rule of 3). They are applied to assemble …
they have been reduced from 5 to 3 (Astex's rule of 3). They are applied to assemble …
Low barrier hydrogen bonds in protein structure and function
MT Kemp, EM Lewandowski, Y Chen - Biochimica et Biophysica Acta (BBA) …, 2021 - Elsevier
Low-barrier hydrogen bonds (LBHBs) are a special type of short hydrogen bond (HB) that is
characterized by the equal sharing of a hydrogen atom. The existence and catalytic role of …
characterized by the equal sharing of a hydrogen atom. The existence and catalytic role of …
Mechanisms of proteolytic enzymes and their inhibition in QM/MM studies
B Elsässer, P Goettig - International Journal of Molecular Sciences, 2021 - mdpi.com
Experimental evidence for enzymatic mechanisms is often scarce, and in many cases
inadvertently biased by the employed methods. Thus, apparently contradictory model …
inadvertently biased by the employed methods. Thus, apparently contradictory model …
Fragment Linking and Optimization of Inhibitors of the Aspartic Protease Endothiapepsin: Fragment‐Based Drug Design Facilitated by Dynamic Combinatorial …
M Mondal, N Radeva, H Fanlo‐Virgós… - Angewandte Chemie …, 2016 - Wiley Online Library
Fragment‐based drug design (FBDD) affords active compounds for biological targets. While
there are numerous reports on FBDD by fragment growing/optimization, fragment linking has …
there are numerous reports on FBDD by fragment growing/optimization, fragment linking has …
Neutron crystallography: opportunities, challenges, and limitations
MP Blakeley, P Langan, N Niimura… - Current opinion in …, 2008 - Elsevier
Neutron crystallography has had an important, but relatively small role in structural biology
over the years. In this review of recently determined neutron structures, a theme emerges of …
over the years. In this review of recently determined neutron structures, a theme emerges of …
Elucidating the protonation state of the γ-secretase catalytic dyad
γ-Secretase (GS) is an intramembrane aspartyl protease that participates in the sequential
cleavage of C99 to generate different isoforms of the amyloid-β (Aβ) peptides that are …
cleavage of C99 to generate different isoforms of the amyloid-β (Aβ) peptides that are …