Promoter-proximal pausing of RNA polymerase II: a nexus of gene regulation

L Core, K Adelman - Genes & development, 2019 - genesdev.cshlp.org
Precise spatio–temporal control of gene activity is essential for organismal development,
growth, and survival in a changing environment. Decisive steps in gene regulation involve …

Born to run: control of transcription elongation by RNA polymerase II

FX Chen, ER Smith, A Shilatifard - Nature reviews Molecular cell …, 2018 - nature.com
The dynamic regulation of transcription elongation by RNA polymerase II (Pol II) is an
integral part of the implementation of gene expression programmes during development. In …

Genomic regulation of transcription and RNA processing by the multitasking Integrator complex

SA Welsh, A Gardini - Nature Reviews Molecular Cell Biology, 2023 - nature.com
In higher eukaryotes, fine-tuned activation of protein-coding genes and many non-coding
RNAs pivots around the regulated activity of RNA polymerase II (Pol II). The Integrator …

The integrator complex attenuates promoter-proximal transcription at protein-coding genes

ND Elrod, T Henriques, KL Huang, DC Tatomer… - Molecular cell, 2019 - cell.com
The transition of RNA polymerase II (Pol II) from initiation to productive elongation is a
central, regulated step in metazoan gene expression. At many genes, Pol II pauses stably in …

Live-cell analysis of endogenous GFP-RPB1 uncovers rapid turnover of initiating and promoter-paused RNA Polymerase II

B Steurer, RC Janssens, B Geverts, ME Geijer… - Proceedings of the …, 2018 - pnas.org
Initiation and promoter-proximal pausing are key regulatory steps of RNA Polymerase II (Pol
II) transcription. To study the in vivo dynamics of endogenous Pol II during these steps, we …

DNA damage-induced transcription stress triggers the genome-wide degradation of promoter-bound Pol II

B Steurer, RC Janssens, ME Geijer… - Nature …, 2022 - nature.com
The precise regulation of RNA Polymerase II (Pol II) transcription after genotoxic stress is
crucial for proper execution of the DNA damage-induced stress response. While stalling of …

Cohesin-dependent and-independent mechanisms mediate chromosomal contacts between promoters and enhancers

MJ Thiecke, G Wutz, M Muhar, W Tang, S Bevan… - Cell reports, 2020 - cell.com
It is currently assumed that 3D chromosomal organization plays a central role in
transcriptional control. However, depletion of cohesin and CTCF affects the steady-state …

Transcriptional control by premature termination: a forgotten mechanism

K Kamieniarz-Gdula, NJ Proudfoot - Trends in Genetics, 2019 - cell.com
The concept of early termination as an important means of transcriptional control has long
been established. Even so, its role in metazoan gene expression is underappreciated …

Termination of transcription by RNA polymerase II: BOOM!

JD Eaton, S West - Trends in Genetics, 2020 - cell.com
RNA polymerase II (Pol II) transcribes hundreds of thousands of transcription units–a
reaction always brought to a close by its termination. Because Pol II transcribes multiple …

The NELF pausing checkpoint mediates the functional divergence of Cdk9

M DeBerardine, GT Booth, PP Versluis… - Nature Communications, 2023 - nature.com
Promoter-proximal pausing by RNA Pol II is a rate-determining step in gene transcription
that is hypothesized to be a prominent point at which regulatory factors act. The pausing …