Prospects and challenges of dynamic DNA nanostructures in biomedical applications
T Tian, Y Li, Y Lin - Bone Research, 2022 - nature.com
The physicochemical nature of DNA allows the assembly of highly predictable structures via
several fabrication strategies, which have been applied to make breakthroughs in various …
several fabrication strategies, which have been applied to make breakthroughs in various …
Design and simulation of DNA, RNA and hybrid protein–nucleic acid nanostructures with oxView
Molecular simulation has become an integral part of the DNA/RNA nanotechnology
research pipeline. In particular, understanding the dynamics of structures and single …
research pipeline. In particular, understanding the dynamics of structures and single …
DNA-based programmable gate arrays for general-purpose DNA computing
H Lv, N ** of arbitrary 2D and 3D wireframe DNA origami
Wireframe DNA origami assemblies can now be programmed automatically from the top-
down using simple wireframe target geometries, or meshes, in 2D and 3D, using either rigid …
down using simple wireframe target geometries, or meshes, in 2D and 3D, using either rigid …
OxDNA. org: a public webserver for coarse-grained simulations of DNA and RNA nanostructures
E Poppleton, R Romero, A Mallya… - Nucleic acids …, 2021 - academic.oup.com
OxDNA and oxRNA are popular coarse-grained models used by the DNA/RNA
nanotechnology community to prototype, analyze and rationalize designed DNA and RNA …
nanotechnology community to prototype, analyze and rationalize designed DNA and RNA …
A lumen-tunable triangular DNA nanopore for molecular sensing and cross-membrane transport
Synthetic membrane nanopores made of DNA are promising systems to sense and control
molecular transport in biosensing, sequencing, and synthetic cells. Lumen-tunable …
molecular transport in biosensing, sequencing, and synthetic cells. Lumen-tunable …
A primer on the oxDNA model of DNA: when to use it, how to simulate it and how to interpret the results
The oxDNA model of Deoxyribonucleic acid has been applied widely to systems in biology,
biophysics and nanotechnology. It is currently available via two independent open source …
biophysics and nanotechnology. It is currently available via two independent open source …
Determining sequence-dependent DNA oligonucleotide hybridization and dehybridization mechanisms using coarse-grained molecular simulation, markov state …
A robust understanding of the sequence-dependent thermodynamics of DNA hybridization
has enabled rapid advances in DNA nanotechnology. A fundamental understanding of the …
has enabled rapid advances in DNA nanotechnology. A fundamental understanding of the …
Planar 2D wireframe DNA origami
Two-dimensional (2D) DNA origami is widely used for applications ranging from excitonics
to single-molecule biophysics. Conventional, single-layer 2D DNA origami exhibits flexibility …
to single-molecule biophysics. Conventional, single-layer 2D DNA origami exhibits flexibility …