Cancer driver mutations: predictions and reality

D Ostroverkhova, TM Przytycka… - Trends in Molecular …, 2023 - cell.com
Cancer cells accumulate many genetic alterations throughout their lifetime, but only a few of
them drive cancer progression, termed driver mutations. Driver mutations may vary between …

Role of non-coding sequence variants in cancer

E Khurana, Y Fu, D Chakravarty, F Demichelis… - Nature Reviews …, 2016 - nature.com
Patients with cancer carry somatic sequence variants in their tumour in addition to the
germline variants in their inherited genome. Although variants in protein-coding regions …

Analyses of non-coding somatic drivers in 2,658 cancer whole genomes

E Rheinbay, MM Nielsen, F Abascal, JA Wala… - Nature, 2020 - nature.com
The discovery of drivers of cancer has traditionally focused on protein-coding genes,,–. Here
we present analyses of driver point mutations and structural variants in non-coding regions …

Non-coding driver mutations in human cancer

K Elliott, E Larsson - Nature Reviews Cancer, 2021 - nature.com
Tumour formation involves random mutagenic events and positive evolutionary selection
acting on a subset of such events, referred to as driver mutations. A decade of careful …

Genome-wide analysis of somatic noncoding mutation patterns in cancer

F Dietlein, AB Wang, C Fagre, A Tang, NJM Besselink… - Science, 2022 - science.org
We established a genome-wide compendium of somatic mutation events in 3949 whole
cancer genomes representing 19 tumor types. Protein-coding events captured well …

Recurrent and functional regulatory mutations in breast cancer

E Rheinbay, P Parasuraman, J Grimsby, G Tiao… - Nature, 2017 - nature.com
Genomic analysis of tumours has led to the identification of hundreds of cancer genes on the
basis of the presence of mutations in protein-coding regions. By contrast, much less is …

OncodriveFML: a general framework to identify coding and non-coding regions with cancer driver mutations

L Mularoni, R Sabarinathan, J Deu-Pons… - Genome biology, 2016 - Springer
Distinguishing the driver mutations from somatic mutations in a tumor genome is one of the
major challenges of cancer research. This challenge is more acute and far from solved for …

Comparative genomics provides etiologic and biological insight into melanoma subtypes

F Newell, PA Johansson, JS Wilmott, K Nones, V Lakis… - Cancer discovery, 2022 - AACR
Melanoma is a cancer of melanocytes, with multiple subtypes based on body site location.
Cutaneous melanoma is associated with skin exposed to ultraviolet radiation; uveal …

Genome-wide map** of somatic mutation rates uncovers drivers of cancer

MA Sherman, AU Yaari, O Priebe, F Dietlein… - Nature …, 2022 - nature.com
Identification of cancer driver mutations that confer a proliferative advantage is central to
understanding cancer; however, searches have often been limited to protein-coding …

Whole-genome landscape of adult T-cell leukemia/lymphoma

Y Kogure, T Kameda, J Koya… - Blood, The Journal …, 2022 - ashpublications.org
Adult T-cell leukemia/lymphoma (ATL) is an aggressive neoplasm immunophenotypically
resembling regulatory T cells, associated with human T-cell leukemia virus type-1. Here, we …