The structure, function, and evolution of plant centromeres

M Naish, IR Henderson - Genome Research, 2024 - genome.cshlp.org
Centromeres are essential regions of eukaryotic chromosomes responsible for the formation
of kinetochore complexes, which connect to spindle microtubules during cell division …

Plant pangenomes for crop improvement, biodiversity and evolution

M Schreiber, M Jayakodi, N Stein… - Nature Reviews Genetics, 2024 - nature.com
Plant genome sequences catalogue genes and the genetic elements that regulate their
expression. Such inventories further research aims as diverse as map** the molecular …

Scalable telomere-to-telomere assembly for diploid and polyploid genomes with double graph

H Cheng, M Asri, J Lucas, S Koren, H Li - Nature methods, 2024 - nature.com
Despite advances in long-read sequencing technologies, constructing a near telomere-to-
telomere assembly is still computationally demanding. Here we present hifiasm (UL), an …

[HTML][HTML] Phylogenomic discovery of deleterious mutations facilitates hybrid potato breeding

Y Wu, D Li, Y Hu, H Li, GP Ramstein, S Zhou, X Zhang… - Cell, 2023 - cell.com
Hybrid potato breeding will transform the crop from a clonally propagated tetraploid to a
seed-reproducing diploid. Historical accumulation of deleterious mutations in potato …

Recent advances in assembly of complex plant genomes

W Kong, Y Wang, S Zhang, J Yu… - Genomics, Proteomics & …, 2023 - academic.oup.com
Over the past 20 years, tremendous advances in sequencing technologies and
computational algorithms have spurred plant genomic research into a thriving era with …

The gap-free potato genome assembly reveals large tandem gene clusters of agronomical importance in highly repeated genomic regions

X Yang, L Zhang, X Guo, J Xu, K Zhang, Y Yang… - Molecular plant, 2023 - cell.com
Potato is a vital food security crop and is ranked as the world's third most important food crop
after rice and wheat. In 2011, the first genome assembly of a doubled monoploid potato DM1 …

Potato and sweetpotato breeding at the International Potato Center: approaches, outcomes and the way forward

H Lindqvist-Kreuze, M Bonierbale… - Theoretical and Applied …, 2024 - Springer
Root and tuber crop breeding is at the front and center of CIP's science program, which
seeks to develop and disseminate sustainable agri-food technologies, information and …

The haplotype-resolved genome assembly of autotetraploid rhubarb Rheum officinale provides insights into its genome evolution and massive accumulation of …

H Zhang, Q He, L **ng, R Wang, Y Wang, Y Liu… - Plant …, 2024 - cell.com
Rheum officinale, a member of the Polygonaceae family, is an important medicinal plant that
is widely used in traditional Chinese medicine. Here, we report a 7.68-Gb chromosome …

Chromosome-level scaffolding of haplotype-resolved assemblies using Hi-C data without reference genomes

X Zeng, Z Yi, X Zhang, Y Du, Y Li, Z Zhou, S Chen… - Nature Plants, 2024 - nature.com
Scaffolding is crucial for constructing most chromosome-level genomes. The high-
throughput chromatin conformation capture (Hi-C) technology has become the primary …

Haplotype-resolved genome assembly for tetraploid Chinese cherry (Prunus pseudocerasus) offers insights into fruit firmness

S Jiu, Z Lv, M Liu, Y Xu, B Chen, X Dong… - Horticulture …, 2024 - academic.oup.com
Chinese cherry (Prunus pseudocerasus) holds considerable importance as one of the
primary stone fruit crops in China. However, artificially improving its traits and genetic …