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Nucleus segmentation: towards automated solutions
Single nucleus segmentation is a frequent challenge of microscopy image processing, since
it is the first step of many quantitative data analysis pipelines. The quality of tracking single …
it is the first step of many quantitative data analysis pipelines. The quality of tracking single …
Recent trends and perspectives in cerebral organoids imaging and analysis
C Brémond Martin, C Simon Chane… - Frontiers in …, 2021 - frontiersin.org
Purpose: Since their first generation in 2013, the use of cerebral organoids has spread
exponentially. Today, the amount of generated data is becoming challenging to analyze …
exponentially. Today, the amount of generated data is becoming challenging to analyze …
Nisnet3d: Three-dimensional nuclear synthesis and instance segmentation for fluorescence microscopy images
The primary step in tissue cytometry is the automated distinction of individual cells
(segmentation). Since cell borders are seldom labeled, cells are generally segmented by …
(segmentation). Since cell borders are seldom labeled, cells are generally segmented by …
Advantages and potential benefits of using organoids in nanotoxicology
VG Nikonorova, VV Chrishtop, VA Mironov… - Cells, 2023 - mdpi.com
Organoids are microtissues that recapitulate the complex structural organization and
functions of tissues and organs. Nanoparticles have several specific properties that must be …
functions of tissues and organs. Nanoparticles have several specific properties that must be …
Intravital and high-content multiplex imaging of the immune system
JL Hor, RN Germain - Trends in cell biology, 2022 - cell.com
Highly motile and functionally diverse immune cells orchestrate effective immune responses
through complex and dynamic cooperative behavior. Multiphoton intravital microscopy (MP …
through complex and dynamic cooperative behavior. Multiphoton intravital microscopy (MP …
Segmentor: a tool for manual refinement of 3D microscopy annotations
D Borland, CM McCormick, NK Patel, O Krupa… - BMC …, 2021 - Springer
Background Recent advances in tissue clearing techniques, combined with high-speed
image acquisition through light sheet microscopy, enable rapid three-dimensional (3D) …
image acquisition through light sheet microscopy, enable rapid three-dimensional (3D) …
[HTML][HTML] Three-dimensional culture models to study innate anti-tumor immune response: advantages and disadvantages
Simple Summary The classical approach to study the immune response against a tumor was
mixing immune cells with tumor cell suspensions in several experimental settings. These …
mixing immune cells with tumor cell suspensions in several experimental settings. These …
In-silico and in-vitro morphometric analysis of intestinal organoids
S Montes-Olivas, D Legge, A Lund… - PLoS Computational …, 2023 - journals.plos.org
Organoids offer a powerful model to study cellular self-organisation, the growth of specific
tissue morphologies in-vitro, and to assess potential medical therapies. However, the …
tissue morphologies in-vitro, and to assess potential medical therapies. However, the …
Deep learning-based tool for morphotypic analysis of 3D multicellular spheroids
Introduction: Three-dimensional (3D) multicellular spheroids are fundamental in vitro tools
for studying in vivo tissues. Volume is the main feature used for evaluating the …
for studying in vivo tissues. Volume is the main feature used for evaluating the …
Marker-controlled watershed with deep edge emphasis and optimized H-minima transform for automatic segmentation of densely cultivated 3D cell nuclei
T Kaseva, B Omidali, E Hippeläinen, T Mäkelä… - BMC …, 2022 - Springer
Background The segmentation of 3D cell nuclei is essential in many tasks, such as targeted
molecular radiotherapies (MRT) for metastatic tumours, toxicity screening, and the …
molecular radiotherapies (MRT) for metastatic tumours, toxicity screening, and the …