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Classification, ontology, and precision medicine
MA Haendel, CG Chute… - New England Journal of …, 2018 - Mass Medical Soc
Ontologies, Phenotypes, and Big Data Data-organizing methods have been in place for
centuries, but very large data sets have come into being relatively recently. The authors …
centuries, but very large data sets have come into being relatively recently. The authors …
The immune epitope database (IEDB): 2018 update
R Vita, S Mahajan, JA Overton, SK Dhanda… - Nucleic acids …, 2019 - academic.oup.com
Abstract The Immune Epitope Database (IEDB, iedb. org) captures experimental data
confined in figures, text and tables of the scientific literature, making it freely available and …
confined in figures, text and tables of the scientific literature, making it freely available and …
Current challenges and recent advances on the path towards continuous biomanufacturing
M Drobnjakovic, R Hart, B Kulvatunyou… - Biotechnology …, 2023 - Wiley Online Library
Continuous biopharmaceutical manufacturing is currently a field of intense research due to
its potential to make the entire production process more optimal for the modern, ever …
its potential to make the entire production process more optimal for the modern, ever …
Human Disease Ontology 2018 update: classification, content and workflow expansion
LM Schriml, E Mitraka, J Munro, B Tauber… - Nucleic acids …, 2019 - academic.oup.com
Abstract The Human Disease Ontology (DO)(http://www. disease-ontology. org), database
has undergone significant expansion in the past three years. The DO disease classification …
has undergone significant expansion in the past three years. The DO disease classification …
BFO: Basic formal ontology
JN Otte, J Beverley, A Ruttenberg - Applied ontology, 2022 - journals.sagepub.com
Basic Formal Ontology (BFO) is a top-level ontology consisting of thirty-six classes, designed
to support information integration, retrieval, and analysis across all domains of scientific …
to support information integration, retrieval, and analysis across all domains of scientific …
The Monarch Initiative: an integrative data and analytic platform connecting phenotypes to genotypes across species
CJ Mungall, JA McMurry, S Köhler… - Nucleic acids …, 2017 - academic.oup.com
The correlation of phenotypic outcomes with genetic variation and environmental factors is a
core pursuit in biology and biomedicine. Numerous challenges impede our progress: patient …
core pursuit in biology and biomedicine. Numerous challenges impede our progress: patient …
CIDO, a community-based ontology for coronavirus disease knowledge and data integration, sharing, and analysis
CIDO, a community-based ontology for coronavirus disease knowledge and data integration,
sharing, and analysis | Scientific Data Skip to main content Thank you for visiting nature.com …
sharing, and analysis | Scientific Data Skip to main content Thank you for visiting nature.com …
SigCom LINCS: data and metadata search engine for a million gene expression signatures
JE Evangelista, DJB Clarke, Z **e… - Nucleic acids …, 2022 - academic.oup.com
Millions of transcriptome samples were generated by the Library of Integrated Network-
based Cellular Signatures (LINCS) program. When these data are processed into …
based Cellular Signatures (LINCS) program. When these data are processed into …
ROBOT: a tool for automating ontology workflows
RC Jackson, JP Balhoff, E Douglass, NL Harris… - BMC …, 2019 - Springer
Background Ontologies are invaluable in the life sciences, but building and maintaining
ontologies often requires a challenging number of distinct tasks such as running automated …
ontologies often requires a challenging number of distinct tasks such as running automated …
Representation of behaviour change interventions and their evaluation: Development of the Upper Level of the Behaviour Change Intervention Ontology
S Michie, R West, AN Finnerty, E Norris… - Wellcome open …, 2021 - pmc.ncbi.nlm.nih.gov
Background: Behaviour change interventions (BCI), their contexts and evaluation methods
are heterogeneous, making it difficult to synthesise evidence and make recommendations …
are heterogeneous, making it difficult to synthesise evidence and make recommendations …