Functional and biomimetic materials for engineering of the three-dimensional cell microenvironment

G Huang, F Li, X Zhao, Y Ma, Y Li, M Lin, G **… - Chemical …, 2017 - ACS Publications
The cell microenvironment has emerged as a key determinant of cell behavior and function
in development, physiology, and pathophysiology. The extracellular matrix (ECM) within the …

Multiscale modeling meets machine learning: What can we learn?

GCY Peng, M Alber, A Buganza Tepole… - … Methods in Engineering, 2021 - Springer
Abstract Machine learning is increasingly recognized as a promising technology in the
biological, biomedical, and behavioral sciences. There can be no argument that this …

Cell-mediated fibre recruitment drives extracellular matrix mechanosensing in engineered fibrillar microenvironments

BM Baker, B Trappmann, WY Wang, MS Sakar… - Nature materials, 2015 - nature.com
To investigate how cells sense stiffness in settings structurally similar to native extracellular
matrices, we designed a synthetic fibrous material with tunable mechanics and user-defined …

FibrilTool, an ImageJ plug-in to quantify fibrillar structures in raw microscopy images

A Boudaoud, A Burian, D Borowska-Wykręt… - Nature protocols, 2014 - nature.com
Cell biology heavily relies on the behavior of fibrillar structures, such as the cytoskeleton, yet
the analysis of their behavior in tissues often remains qualitative. Image analysis tools have …

3D spatiotemporal mechanical microenvironment: a hydrogel‐based platform for guiding stem cell fate

Y Ma, M Lin, G Huang, Y Li, S Wang, G Bai… - Advanced …, 2018 - Wiley Online Library
Stem cells hold great promise for widespread biomedical applications, for which stem cell
fate needs to be well tailored. Besides biochemical cues, accumulating evidence has …

Long-range force transmission in fibrous matrices enabled by tension-driven alignment of fibers

H Wang, AS Abhilash, CS Chen, RG Wells… - Biophysical journal, 2014 - cell.com
Cells can sense and respond to mechanical signals over relatively long distances across
fibrous extracellular matrices. Recently proposed models suggest that long-range force …

Skin structure–function relationships and the wound healing response to intrinsic aging

MJ Blair, JD Jones, AE Woessner… - Advances in wound …, 2020 - liebertpub.com
Significance: Chronic wounds, such as diabetic foot ulcers, venous stasis ulcers, and
pressure ulcers affect millions of Americans each year, and disproportionately afflict our …

Mechanisms of plastic deformation in collagen networks induced by cellular forces

E Ban, JM Franklin, S Nam, LR Smith, H Wang… - Biophysical journal, 2018 - cell.com
Contractile cells can reorganize fibrous extracellular matrices and form dense tracts of fibers
between neighboring cells. These tracts guide the development of tubular tissue structures …

Remodeling of fibrous extracellular matrices by contractile cells: predictions from discrete fiber network simulations

AS Abhilash, BM Baker, B Trappmann, CS Chen… - Biophysical journal, 2014 - cell.com
Contractile forces exerted on the surrounding extracellular matrix (ECM) lead to the
alignment and stretching of constituent fibers within the vicinity of cells. As a consequence …

Multiscale computational models of complex biological systems

J Walpole, JA Papin, SM Peirce - Annual review of biomedical …, 2013 - annualreviews.org
Integration of data across spatial, temporal, and functional scales is a primary focus of
biomedical engineering efforts. The advent of powerful computing platforms, coupled with …