Advancing human genetics research and drug discovery through exome sequencing of the UK Biobank

JD Szustakowski, S Balasubramanian, E Kvikstad… - Nature …, 2021 - nature.com
Abstract The UK Biobank Exome Sequencing Consortium (UKB-ESC) is a private–public
partnership between the UK Biobank (UKB) and eight biopharmaceutical companies that …

Role of dietary nutrients in the modulation of gut microbiota: a narrative review

Q Yang, Q Liang, B Balakrishnan, DP Belobrajdic… - Nutrients, 2020 - mdpi.com
Understanding how dietary nutrients modulate the gut microbiome is of great interest for the
development of food products and eating patterns for combatting the global burden of non …

[HTML][HTML] Microbiota metabolism of intestinal amino acids impacts host nutrient homeostasis and physiology

TT Li, X Chen, D Huo, M Arifuzzaman, S Qiao, WB **… - Cell Host & Microbe, 2024 - cell.com
The intestine and liver are thought to metabolize dietary nutrients and regulate host nutrient
homeostasis. Here, we find that the gut microbiota also reshapes the host amino acid (aa) …

Primer, pipelines, parameters: issues in 16S rRNA gene sequencing

I Abellan-Schneyder, MS Matchado, S Reitmeier… - Msphere, 2021 - journals.asm.org
Short-amplicon 16S rRNA gene sequencing is currently the method of choice for studies
investigating microbiomes. However, comparative studies on differences in procedures are …

[HTML][HTML] Mechanisms underlying microbial-mediated changes in social behavior in mouse models of autism spectrum disorder

M Sgritta, SW Dooling, SA Buffington, EN Momin… - Neuron, 2019 - cell.com
Currently, there are no medications that effectively treat the core symptoms of Autism
Spectrum Disorder (ASD). We recently found that the bacterial species Lactobacillus (L.) …

The commensal microbiome is associated with anti–PD-1 efficacy in metastatic melanoma patients

V Matson, J Fessler, R Bao, T Chongsuwat, Y Zha… - Science, 2018 - science.org
Anti–PD-1–based immunotherapy has had a major impact on cancer treatment but has only
benefited a subset of patients. Among the variables that could contribute to interpatient …

[HTML][HTML] Environmental antibiotics and resistance genes as emerging contaminants: methods of detection and bioremediation

N Koch, NF Islam, S Sonowal, R Prasad… - Current research in …, 2021 - Elsevier
In develo** countries, the use of antibiotics has helped to reduce the mortality rate by
minimizing the deaths caused by pathogenic infections, but the costs of antibiotic …

1,520 reference genomes from cultivated human gut bacteria enable functional microbiome analyses

Y Zou, W Xue, G Luo, Z Deng, P Qin, R Guo… - Nature …, 2019 - nature.com
Reference genomes are essential for metagenomic analyses and functional characterization
of the human gut microbiota. We present the Culturable Genome Reference (CGR), a …

Probiotics, gut microbiota, and their influence on host health and disease

B Sánchez, S Delgado… - Molecular nutrition & …, 2017 - Wiley Online Library
The gastrointestinal tract of mammals hosts a high and diverse number of different
microorganisms, known as intestinal microbiota. Many probiotics were originally isolated …

Top-down identification of keystone taxa in the microbiome

G Amit, A Bashan - Nature communications, 2023 - nature.com
Keystone taxa in ecological communities are native taxa that play an especially important
role in the stability of their ecosystem. However, we still lack an effective framework for …