The multimodality cell segmentation challenge: toward universal solutions

J Ma, R **e, S Ayyadhury, C Ge, A Gupta, R Gupta… - Nature …, 2024 - nature.com
Cell segmentation is a critical step for quantitative single-cell analysis in microscopy images.
Existing cell segmentation methods are often tailored to specific modalities or require …

A survey on cell nuclei instance segmentation and classification: Leveraging context and attention

JD Nunes, D Montezuma, D Oliveira, T Pereira… - Medical Image …, 2024 - Elsevier
Nuclear-derived morphological features and biomarkers provide relevant insights regarding
the tumour microenvironment, while also allowing diagnosis and prognosis in specific …

Nuinsseg: a fully annotated dataset for nuclei instance segmentation in h&e-stained histological images

A Mahbod, C Polak, K Feldmann, R Khan, K Gelles… - Scientific Data, 2024 - nature.com
In computational pathology, automatic nuclei instance segmentation plays an essential role
in whole slide image analysis. While many computerized approaches have been proposed …

Machine learning for cross-scale microscopy of viruses

A Petkidis, V Andriasyan, UF Greber - Cell Reports Methods, 2023 - cell.com
Despite advances in virological sciences and antiviral research, viruses continue to emerge,
circulate, and threaten public health. We still lack a comprehensive understanding of how …

Domain generalization in computational pathology: Survey and guidelines

M Jahanifar, M Raza, K Xu, T Vuong… - arxiv preprint arxiv …, 2023 - arxiv.org
Deep learning models have exhibited exceptional effectiveness in Computational Pathology
(CPath) by tackling intricate tasks across an array of histology image analysis applications …

Dawn: Domain-adaptive weakly supervised nuclei segmentation via cross-task interactions

Y Zhang, Y Wang, Z Fang, H Bian, L Cai… - … on Circuits and …, 2024 - ieeexplore.ieee.org
Weakly supervised segmentation methods have garnered considerable attention due to
their potential to alleviate the need for labor-intensive pixel-level annotations during model …

[HTML][HTML] Tissue concepts: Supervised foundation models in computational pathology

T Nicke, JR Schäfer, H Höfener, F Feuerhake… - Computers in Biology …, 2025 - Elsevier
Due to the increasing workload of pathologists, the need for automation to support
diagnostic tasks and quantitative biomarker evaluation is becoming more and more …

Hover-next: A fast nuclei segmentation and classification pipeline for next generation histopathology

E Baumann, B Dislich, JL Rumberger… - Medical Imaging with …, 2024 - openreview.net
In cancer, a variety of cell types, along with their local density and spatial organization within
tissues, play a key role in driving cancer progression and modulating patient outcomes. At …

A general algorithm for consensus 3D cell segmentation from 2D segmented stacks

FY Zhou, C Yapp, Z Shang, S Daetwyler, Z Marin… - …, 2024 - pmc.ncbi.nlm.nih.gov
Cell segmentation is the fundamental task. Only by segmenting, can we define the
quantitative spatial unit for collecting measurements to draw biological conclusions. Deep …

Deep learning for predicting prognostic consensus molecular subtypes in cervical cancer from histology images

R Wang, GN Gunesli, VE Skingen, KAF Valen… - npj Precision …, 2025 - nature.com
Cervical cancer remains the fourth most common cancer among women worldwide. This
study proposes an end-to-end deep learning framework to predict consensus molecular …