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The multimodality cell segmentation challenge: toward universal solutions
Cell segmentation is a critical step for quantitative single-cell analysis in microscopy images.
Existing cell segmentation methods are often tailored to specific modalities or require …
Existing cell segmentation methods are often tailored to specific modalities or require …
A survey on cell nuclei instance segmentation and classification: Leveraging context and attention
Nuclear-derived morphological features and biomarkers provide relevant insights regarding
the tumour microenvironment, while also allowing diagnosis and prognosis in specific …
the tumour microenvironment, while also allowing diagnosis and prognosis in specific …
Nuinsseg: a fully annotated dataset for nuclei instance segmentation in h&e-stained histological images
A Mahbod, C Polak, K Feldmann, R Khan, K Gelles… - Scientific Data, 2024 - nature.com
In computational pathology, automatic nuclei instance segmentation plays an essential role
in whole slide image analysis. While many computerized approaches have been proposed …
in whole slide image analysis. While many computerized approaches have been proposed …
Machine learning for cross-scale microscopy of viruses
Despite advances in virological sciences and antiviral research, viruses continue to emerge,
circulate, and threaten public health. We still lack a comprehensive understanding of how …
circulate, and threaten public health. We still lack a comprehensive understanding of how …
Domain generalization in computational pathology: Survey and guidelines
Deep learning models have exhibited exceptional effectiveness in Computational Pathology
(CPath) by tackling intricate tasks across an array of histology image analysis applications …
(CPath) by tackling intricate tasks across an array of histology image analysis applications …
Dawn: Domain-adaptive weakly supervised nuclei segmentation via cross-task interactions
Y Zhang, Y Wang, Z Fang, H Bian, L Cai… - … on Circuits and …, 2024 - ieeexplore.ieee.org
Weakly supervised segmentation methods have garnered considerable attention due to
their potential to alleviate the need for labor-intensive pixel-level annotations during model …
their potential to alleviate the need for labor-intensive pixel-level annotations during model …
[HTML][HTML] Tissue concepts: Supervised foundation models in computational pathology
Due to the increasing workload of pathologists, the need for automation to support
diagnostic tasks and quantitative biomarker evaluation is becoming more and more …
diagnostic tasks and quantitative biomarker evaluation is becoming more and more …
Hover-next: A fast nuclei segmentation and classification pipeline for next generation histopathology
In cancer, a variety of cell types, along with their local density and spatial organization within
tissues, play a key role in driving cancer progression and modulating patient outcomes. At …
tissues, play a key role in driving cancer progression and modulating patient outcomes. At …
A general algorithm for consensus 3D cell segmentation from 2D segmented stacks
Cell segmentation is the fundamental task. Only by segmenting, can we define the
quantitative spatial unit for collecting measurements to draw biological conclusions. Deep …
quantitative spatial unit for collecting measurements to draw biological conclusions. Deep …
Deep learning for predicting prognostic consensus molecular subtypes in cervical cancer from histology images
Cervical cancer remains the fourth most common cancer among women worldwide. This
study proposes an end-to-end deep learning framework to predict consensus molecular …
study proposes an end-to-end deep learning framework to predict consensus molecular …