Challenges in analysis and interpretation of microsatellite data for population genetic studies

AI Putman, I Carbone - Ecology and evolution, 2014 - Wiley Online Library
Advancing technologies have facilitated the ever‐widening application of genetic markers
such as microsatellites into new systems and research questions in biology. In light of the …

Trapped within the city: Integrating demography, time since isolation and population‐specific traits to assess the genetic effects of urbanization

A Lourenço, D Álvarez, IJ Wang… - Molecular …, 2017 - Wiley Online Library
Urbanization is a severe form of habitat fragmentation that can cause many species to be
locally extirpated and many others to become trapped and isolated within an urban matrix …

Fishing for divergence in a sea of connectivity: the utility of ddRADseq genoty** in a marine invertebrate, the black-lip pearl oyster Pinctada margaritifera

MM Lal, PC Southgate, DR Jerry, KR Zenger - Marine Genomics, 2016 - Elsevier
Population genomic investigations on highly dispersive marine organisms typically require
thousands of genome-wide SNP loci to resolve fine-scale population structure and detect …

Genetic and ecological insights into glacial refugia of walnut (Juglans regia L.)

M Aradhya, D Velasco, Z Ibrahimov, B Toktoraliev… - PloS one, 2017 - journals.plos.org
The distribution and survival of trees during the last glacial maximum (LGM) has been of
interest to paleoecologists, biogeographers, and geneticists. Ecological niche models that …

Development of SNP-based assays for disease resistance and fruit quality traits in apple (Malus × domestica Borkh.) and validation in breeding pilot studies

IO Baumgartner, M Kellerhals, F Costa, L Dondini… - Tree genetics & …, 2016 - Springer
The development of molecular markers linked to specific traits is now routine practice, but
the gap between genomics and breeding often delays their application. In the frame of the …

Estimating relatedness in the presence of null alleles

K Huang, K Ritland, DW Dunn, X Qi, S Guo, B Li - Genetics, 2016 - academic.oup.com
Studies of genetics and ecology often require estimates of relatedness coefficients based on
genetic marker data. However, with the presence of null alleles, an observed genotype can …

An extreme environment drives local adaptation of Genista tinctoria (Fabaceae) from the Mefite (Ansanto Valley, southern Italy)

E Di Iorio, B Menale, M Innangi… - Botanical Journal of …, 2023 - academic.oup.com
Abstract The Mefite in the Ansanto Valley is one of the largest and oldest cold natural carbon
dioxide springs (CNCDS) known in the world. This site is characterized by toxic …

Kinship influences sperm whale social organization within, but generally not among, social units

CM Konrad, S Gero, T Frasier… - Royal Society Open …, 2018 - royalsocietypublishing.org
Sperm whales have a multi-level social structure based upon long-term, cooperative social
units. What role kinship plays in structuring this society is poorly understood. We combined …

Polygamy slows down population divergence in shorebirds

J D'Urban Jackson, N Dos Remedios, KH Maher… - …, 2017 - academic.oup.com
Sexual selection may act as a promotor of speciation since divergent mate choice and
competition for mates can rapidly lead to reproductive isolation. Alternatively, sexual …

'True'null allele detection in microsatellite loci: a comparison of methods, assessment of difficulties and survey of possible improvements

MJ Dąbrowski, S Bornelöv, M Kruczyk… - Molecular ecology …, 2015 - Wiley Online Library
Null alleles are alleles that for various reasons fail to amplify in a PCR assay. The presence
of null alleles in microsatellite data is known to bias the genetic parameter estimates. Thus …