Julich-Brain: A 3D probabilistic atlas of the human brain's cytoarchitecture

K Amunts, H Mohlberg, S Bludau, K Zilles - Science, 2020 - science.org
Cytoarchitecture is a basic principle of microstructural brain parcellation. We introduce Julich-
Brain, a three-dimensional atlas containing cytoarchitectonic maps of cortical areas and …

Survey of methods and principles in three-dimensional reconstruction from two-dimensional medical images

M Sarmah, A Neelima, HR Singh - Visual computing for industry …, 2023 - Springer
Abstract Three-dimensional (3D) reconstruction of human organs has gained attention in
recent years due to advances in the Internet and graphics processing units. In the coming …

Evolution of human brain atlases in terms of content, applications, functionality, and availability

WL Nowinski - Neuroinformatics, 2021 - Springer
Human brain atlases have been evolving tremendously, propelled recently by brain big
projects, and driven by sophisticated imaging techniques, advanced brain map** …

Waxholm Space atlas of the rat brain: A 3D atlas supporting data analysis and integration

H Kleven, IE Bjerke, F Clascá, HJ Groenewegen… - Nature …, 2023 - nature.com
Volumetric brain atlases are increasingly used to integrate and analyze diverse
experimental neuroscience data acquired from animal models, but until recently a publicly …

Spatial registration of serial microscopic brain images to three-dimensional reference atlases with the QuickNII tool

MA Puchades, G Csucs, D Ledergerber, TB Leergaard… - PloS one, 2019 - journals.plos.org
Modern high throughput brain wide profiling techniques for cells and their morphology,
connectivity, and other properties, make the use of reference atlases with 3D coordinate …

A detailed spatiotemporal atlas of the white matter tracts for the fetal brain

C Calixto, M Dorigatti Soldatelli, C Jaimes… - Proceedings of the …, 2025 - pnas.org
This study presents the construction of a comprehensive spatiotemporal atlas of white matter
tracts in the fetal brain for every gestational week between 23 and 36 wk using diffusion MRI …

DeepSlice: rapid fully automatic registration of mouse brain imaging to a volumetric atlas

H Carey, M Pegios, L Martin, C Saleeba… - Nature …, 2023 - nature.com
Registration of data to a common frame of reference is an essential step in the analysis and
integration of diverse neuroscientific data. To this end, volumetric brain atlases enable …

QUINT: workflow for quantification and spatial analysis of features in histological images from rodent brain

SC Yates, NE Groeneboom, C Coello… - Frontiers in …, 2019 - frontiersin.org
Transgenic animal models are invaluable research tools for elucidating the pathways and
mechanisms involved in the development of neurodegenerative diseases. Mechanistic clues …

Nutil: a pre-and post-processing toolbox for histological rodent brain section images

NE Groeneboom, SC Yates, MA Puchades… - Frontiers in …, 2020 - frontiersin.org
With recent technological advances in microscopy and image acquisition of tissue sections,
further developments of tools are required for viewing, transforming, and analyzing the ever …