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A guide to single-particle tracking
Individual proteins and protein complexes undergo various motion types, including free
diffusion, confinement, subdiffusion and directed motion. Different motion behaviours reflect …
diffusion, confinement, subdiffusion and directed motion. Different motion behaviours reflect …
Bacterial DNA excision repair pathways
Bacteria are continuously exposed to numerous endogenous and exogenous DNA-
damaging agents. To maintain genome integrity and ensure cell survival, bacteria have …
damaging agents. To maintain genome integrity and ensure cell survival, bacteria have …
ATP-driven separation of liquid phase condensates in bacteria
Liquid-liquid phase-separated (LLPS) states are key to compartmentalizing components in
the absence of membranes; however, it is unclear whether LLPS condensates are actively …
the absence of membranes; however, it is unclear whether LLPS condensates are actively …
Single-molecule imaging of LexA degradation in Escherichia coli elucidates regulatory mechanisms and heterogeneity of the SOS response
EC Jones, S Uphoff - Nature microbiology, 2021 - nature.com
The bacterial SOS response represents a paradigm of gene networks controlled by a master
transcriptional regulator. Self-cleavage of the SOS repressor LexA induces a wide range of …
transcriptional regulator. Self-cleavage of the SOS repressor LexA induces a wide range of …
Single-molecule kinetics in living cells
In the past decades, advances in microscopy have made it possible to study the dynamics of
individual biomolecules in vitro and resolve intramolecular kinetics that would otherwise be …
individual biomolecules in vitro and resolve intramolecular kinetics that would otherwise be …
Transient non-specific DNA binding dominates the target search of bacterial DNA-binding proteins
Despite their diverse biochemical characteristics and functions, all DNA-binding proteins
share the ability to accurately locate their target sites among the vast excess of non-target …
share the ability to accurately locate their target sites among the vast excess of non-target …
Response mechanisms to acid stress of acid-resistant bacteria and biotechnological applications in the food industry
J Xu, L Guo, N Zhao, X Meng, J Zhang… - Critical Reviews in …, 2023 - Taylor & Francis
Acid-resistant bacteria are more and more widely used in industrial production due to their
unique acid-resistant properties. In order to survive in various acidic environments, acid …
unique acid-resistant properties. In order to survive in various acidic environments, acid …
Adaptation delay causes a burst of mutations in bacteria responding to oxidative stress
V Lagage, V Chen, S Uphoff - EMBO reports, 2023 - embopress.org
Understanding the interplay between phenotypic and genetic adaptation is a focus of
evolutionary biology. In bacteria, the oxidative stress response prevents mutagenesis by …
evolutionary biology. In bacteria, the oxidative stress response prevents mutagenesis by …
[HTML][HTML] Understanding protein mobility in bacteria by tracking single molecules
Protein diffusion is crucial for understanding the formation of protein complexes in vivo and
has been the subject of many fluorescence microscopy studies in cells; however, such …
has been the subject of many fluorescence microscopy studies in cells; however, such …
Mechanistic insights into transcription coupled DNA repair
Transcription-coupled DNA repair (TCR) acts on lesions in the transcribed strand of active
genes. Helix distorting adducts and other forms of DNA damage often interfere with the …
genes. Helix distorting adducts and other forms of DNA damage often interfere with the …