[HTML][HTML] Considerations for constructing a protein sequence database for metaproteomics
Mass spectrometry-based metaproteomics has emerged as a prominent technique for
interrogating the functions of specific organisms in microbial communities, in addition to total …
interrogating the functions of specific organisms in microbial communities, in addition to total …
The astounding exhaustiveness and speed of the Astral mass analyzer for highly complex samples is a quantum leap in the functional analysis of microbiomes
T Dumas, R Martinez Pinna, C Lozano, S Radau… - Microbiome, 2024 - Springer
Background By analyzing the proteins which are the workhorses of biological systems,
metaproteomics allows us to list the taxa present in any microbiota, monitor their relative …
metaproteomics allows us to list the taxa present in any microbiota, monitor their relative …
[HTML][HTML] Meta-omics profiling of full-scale groundwater rapid sand filters explains stratification of iron, ammonium and manganese removals
Rapid sand filters (RSF) are an established and widely applied technology for groundwater
treatment. Yet, the underlying interwoven biological and physical-chemical reactions …
treatment. Yet, the underlying interwoven biological and physical-chemical reactions …
Integrating the milk microbiome signatures in mastitis: milk-omics and functional implications
Mammalian milk contains a variety of complex bioactive and nutritional components and
microorganisms. These microorganisms have diverse compositions and functional roles that …
microorganisms. These microorganisms have diverse compositions and functional roles that …
Benchmarking low-and high-throughput protein cleanup and digestion methods for human fecal metaproteomics
The application of fecal metaproteomics to large-scale studies of the gut microbiota requires
high-throughput analysis and standardized experimental protocols. Although high …
high-throughput analysis and standardized experimental protocols. Although high …
Results from a multi-laboratory ocean metaproteomic intercomparison: effects of LC-MS acquisition and data analysis procedures
Metaproteomics is an increasingly popular methodology that provides information regarding
the metabolic functions of specific microbial taxa and has potential for contributing to ocean …
the metabolic functions of specific microbial taxa and has potential for contributing to ocean …
[HTML][HTML] MetaPep: A core peptide database for faster human gut metaproteomics database searches
Metaproteomics has increasingly been applied to study functional changes in the human gut
microbiome. Peptide identification is an important step in metaproteomics research, with …
microbiome. Peptide identification is an important step in metaproteomics research, with …
Cultivated genome references for protein database construction and high-resolution taxonomic annotation in metaproteomics
Metaproteomics offers a profound understanding of the functional dynamics of the gut
microbiome, which is crucial for personalized healthcare strategies. The selection of an …
microbiome, which is crucial for personalized healthcare strategies. The selection of an …
Extraction of Proteins from Microbiome of Livestocks
The development of high throughput methods has enabled the study of hundreds of samples
and metaproteomics is not the exception. However, the study of thousands of proteins of …
and metaproteomics is not the exception. However, the study of thousands of proteins of …
Results from a multi-laboratory ocean metaproteomic intercomparison
MA Saito, JK Saunders, MR McIlvin, EM Bertrand… - 2024 - repository.tudelft.nl
Metaproteomics is an increasingly popular methodology that provides information regarding
the metabolic functions of specific microbial taxa and has potential for contributing to ocean …
the metabolic functions of specific microbial taxa and has potential for contributing to ocean …