Impact of risk factors on early cancer evolution

CE Weeden, W Hill, EL Lim, E Grönroos, C Swanton - Cell, 2023 - cell.com
Recent identification of oncogenic cells within healthy tissues and the prevalence of indolent
cancers found incidentally at autopsies reveal a greater complexity in tumor initiation than …

[HTML][HTML] The translational challenges of precision oncology

O Pich, C Bailey, TBK Watkins, S Zaccaria… - Cancer Cell, 2022 - cell.com
The translational challenges in the field of precision oncology are in part related to the
biological complexity and diversity of this disease. Technological advances in genomics …

Lung adenocarcinoma promotion by air pollutants

W Hill, EL Lim, CE Weeden, C Lee, M Augustine… - Nature, 2023 - nature.com
A complete understanding of how exposure to environmental substances promotes cancer
formation is lacking. More than 70 years ago, tumorigenesis was proposed to occur in a two …

Genomic and evolutionary classification of lung cancer in never smokers

T Zhang, P Joubert, N Ansari-Pour, W Zhao… - Nature …, 2021 - nature.com
Lung cancer in never smokers (LCINS) is a common cause of cancer mortality but its
genomic landscape is poorly characterized. Here high-coverage whole-genome sequencing …

[HTML][HTML] Pan-cancer proteogenomics connects oncogenic drivers to functional states

Y Li, E Porta-Pardo, C Tokheim, MH Bailey, TM Yaron… - Cell, 2023 - cell.com
Cancer driver events refer to key genetic aberrations that drive oncogenesis; however, their
exact molecular mechanisms remain insufficiently understood. Here, our multi-omics pan …

Saturation genome editing maps the functional spectrum of pathogenic VHL alleles

M Buckley, C Terwagne, A Ganner, L Cubitt, R Brewer… - Nature …, 2024 - nature.com
To maximize the impact of precision medicine approaches, it is critical to identify genetic
variants underlying disease and to accurately quantify their functional effects. A gene …

Massively parallel phenoty** of coding variants in cancer with Perturb-seq

O Ursu, JT Neal, E Shea, PI Thakore… - Nature …, 2022 - nature.com
Genome sequencing studies have identified millions of somatic variants in cancer, but it
remains challenging to predict the phenotypic impact of most. Experimental approaches to …

[HTML][HTML] The structural coverage of the human proteome before and after AlphaFold

E Porta-Pardo, V Ruiz-Serra, S Valentini… - PLoS computational …, 2022 - journals.plos.org
The protein structure field is experiencing a revolution. From the increased throughput of
techniques to determine experimental structures, to developments such as cryo-EM that …

Base editing screens map mutations affecting interferon-γ signaling in cancer

MA Coelho, S Cooper, ME Strauss, E Karakoc… - Cancer Cell, 2023 - cell.com
Summary Interferon-γ (IFN-γ) signaling mediates host responses to infection, inflammation
and anti-tumor immunity. Mutations in the IFN-γ signaling pathway cause immunological …

[HTML][HTML] Artificial intelligence in hematological diagnostics: Game changer or gadget?

W Walter, C Pohlkamp, M Meggendorfer, N Nadarajah… - Blood Reviews, 2023 - Elsevier
The future of clinical diagnosis and treatment of hematologic diseases will inevitably involve
the integration of artificial intelligence (AI)-based systems into routine practice to support the …