A practical guide to methods of parentage analysis

AG Jones, CM Small, KA Paczolt… - Molecular ecology …, 2010 - Wiley Online Library
The use of molecular techniques for parentage analysis has been a booming science for
over a decade. The most important technological breakthrough was the introduction of …

genepop'007: a complete re‐implementation of the genepop software for Windows and Linux

F Rousset - Molecular ecology resources, 2008 - Wiley Online Library
This note summarizes developments of the genepop software since its first description in
1995, and in particular those new to version 4.0: an extended input format, several …

Revising how the computer program cervus accommodates genoty** error increases success in paternity assignment

ST Kalinowski, ML Taper, TC Marshall - Molecular ecology, 2007 - Wiley Online Library
Genotypes are frequently used to identify parentage. Such analysis is notoriously vulnerable
to genoty** error, and there is ongoing debate regarding how to solve this problem. Many …

mlrelate: a computer program for maximum likelihood estimation of relatedness and relationship

ST Kalinowski, AP Wagner… - Molecular Ecology …, 2006 - Wiley Online Library
Genetic data are useful for estimating the genealogical relationship or relatedness between
individuals of unknown ancestry. We present a computer program, ml‐relate that calculates …

Simultaneous estimation of null alleles and inbreeding coefficients

IJ Chybicki, J Burczyk - Journal of Heredity, 2009 - academic.oup.com
Although microsatellites are a very efficient tool for many population genetics applications,
they may occasionally produce “null” alleles, which, when present in high proportion, may …

Absolute abundance of southern bluefin tuna estimated by close-kin mark-recapture

MV Bravington, PM Grewe, CR Davies - Nature communications, 2016 - nature.com
Southern bluefin tuna is a highly valuable, severely depleted species, whose abundance
and productivity have been difficult to assess with conventional fishery data. Here we use …

An empirical comparison of SNPs and microsatellites for parentage and kinship assignment in a wild sockeye salmon (Oncorhynchus nerka) population

L Hauser, M Baird, RAY Hilborn… - Molecular ecology …, 2011 - Wiley Online Library
Because of their high variability, microsatellites are still considered the marker of choice for
studies on parentage and kinship in wild populations. Nevertheless, single nucleotide …

The SSR null allele problem, and its consequences in pedigree reconstruction and population genetic studies in viticulture

G Jahnke, J Smidla, T Deák, R Oláh, BÁ Szőke… - Horticulturae, 2022 - mdpi.com
Null alleles are alleles that are recessive to codominant markers without any effect on the
phenotype. In SSR assays, there are several reasons for the lack of amplification at a locus …

Invasion of novel habitats uncouples haplo‐diplontic life cycles

SA Krueger‐Hadfield, NM Kollars, JE Byers… - Molecular …, 2016 - Wiley Online Library
Baker's Law predicts uniparental reproduction will facilitate colonization success in novel
habitats. While evidence supports this prediction among colonizing plants and animals, few …

Assessment of genetic diversity of Philippine rice cultivars carrying good quality traits using SSR markers

VC Lapitan, DS Brar, T Abe, ED Redoña - Breeding science, 2007 - jstage.jst.go.jp
Microsatellite markers, also known as simple sequence repeat (SSR) markers have been
useful for the detection of genetic diversity. Twenty-four rice cultivars carrying good quality …