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Optimizing the Cell Painting assay for image-based profiling
In image-based profiling, software extracts thousands of morphological features of cells from
multi-channel fluorescence microscopy images, yielding single-cell profiles that can be used …
multi-channel fluorescence microscopy images, yielding single-cell profiles that can be used …
Cell Painting: a decade of discovery and innovation in cellular imaging
Modern quantitative image analysis techniques have enabled high-throughput, high-content
imaging experiments. Image-based profiling leverages the rich information in images to …
imaging experiments. Image-based profiling leverages the rich information in images to …
Learning representations for image-based profiling of perturbations
Measuring the phenotypic effect of treatments on cells through imaging assays is an efficient
and powerful way of studying cell biology, and requires computational methods for …
and powerful way of studying cell biology, and requires computational methods for …
Three million images and morphological profiles of cells treated with matched chemical and genetic perturbations
The identification of genetic and chemical perturbations with similar impacts on cell
morphology can elucidate compounds' mechanisms of action or novel regulators of genetic …
morphology can elucidate compounds' mechanisms of action or novel regulators of genetic …
High-dimensional gene expression and morphology profiles of cells across 28,000 genetic and chemical perturbations
Cells can be perturbed by various chemical and genetic treatments and the impact on gene
expression and morphology can be measured via transcriptomic profiling and image-based …
expression and morphology can be measured via transcriptomic profiling and image-based …
Application of cell painting for chemical hazard evaluation in support of screening-level chemical assessments
J Nyffeler, C Willis, FR Harris, MJ Foster… - Toxicology and applied …, 2023 - Elsevier
Abstract 'Cell Painting'is an imaging-based high-throughput phenotypic profiling (HTPP)
method in which cultured cells are fluorescently labeled to visualize subcellular structures …
method in which cultured cells are fluorescently labeled to visualize subcellular structures …
[HTML][HTML] Evolution and impact of high content imaging
Abstract/outline The field of high content imaging has steadily evolved and expanded
substantially across many industry and academic research institutions since it was first …
substantially across many industry and academic research institutions since it was first …
Advancing targeted protein degradation via multiomics profiling and artificial intelligence
Only around 20% of the human proteome is considered to be druggable with small-molecule
antagonists. This leaves some of the most compelling therapeutic targets outside the reach …
antagonists. This leaves some of the most compelling therapeutic targets outside the reach …
A pooled cell painting CRISPR screening platform enables de novo inference of gene function by self-supervised deep learning
Pooled CRISPR screening has emerged as a powerful method of map** gene functions
thanks to its scalability, affordability, and robustness against well or plate-specific …
thanks to its scalability, affordability, and robustness against well or plate-specific …
Using Transcriptomics and cell morphology data in drug discovery: the long road to practice
Gene expression and cell morphology data are high-dimensional biological readouts of
much recent interest for drug discovery. They are able to describe biological systems in …
much recent interest for drug discovery. They are able to describe biological systems in …