Graph neural networks: Taxonomy, advances, and trends

Y Zhou, H Zheng, X Huang, S Hao, D Li… - ACM Transactions on …, 2022 - dl.acm.org
Graph neural networks provide a powerful toolkit for embedding real-world graphs into low-
dimensional spaces according to specific tasks. Up to now, there have been several surveys …

Analyzing learned molecular representations for property prediction

K Yang, K Swanson, W **, C Coley… - Journal of chemical …, 2019 - ACS Publications
Advancements in neural machinery have led to a wide range of algorithmic solutions for
molecular property prediction. Two classes of models in particular have yielded promising …

Self-supervised graph-level representation learning with local and global structure

M Xu, H Wang, B Ni, H Guo… - … Conference on Machine …, 2021 - proceedings.mlr.press
This paper studies unsupervised/self-supervised whole-graph representation learning,
which is critical in many tasks such as molecule properties prediction in drug and material …

Graph clustering with graph neural networks

A Tsitsulin, J Palowitch, B Perozzi, E Müller - Journal of Machine Learning …, 2023 - jmlr.org
Graph Neural Networks (GNNs) have achieved state-of-the-art results on many graph
analysis tasks such as node classification and link prediction. However, important …

Learning to pre-train graph neural networks

Y Lu, X Jiang, Y Fang, C Shi - Proceedings of the AAAI conference on …, 2021 - ojs.aaai.org
Graph neural networks (GNNs) have become the defacto standard for representation
learning on graphs, which derive effective node representations by recursively aggregating …

Random walk graph neural networks

G Nikolentzos, M Vazirgiannis - Advances in Neural …, 2020 - proceedings.neurips.cc
In recent years, graph neural networks (GNNs) have become the de facto tool for performing
machine learning tasks on graphs. Most GNNs belong to the family of message passing …

Kergnns: Interpretable graph neural networks with graph kernels

A Feng, C You, S Wang, L Tassiulas - Proceedings of the AAAI …, 2022 - ojs.aaai.org
Graph kernels are historically the most widely-used technique for graph classification tasks.
However, these methods suffer from limited performance because of the hand-crafted …

Pre-training graph neural networks for link prediction in biomedical networks

Y Long, M Wu, Y Liu, Y Fang, CK Kwoh, J Chen… - …, 2022 - academic.oup.com
Motivation Graphs or networks are widely utilized to model the interactions between different
entities (eg proteins, drugs, etc.) for biomedical applications. Predicting potential …

Graph kernels: A survey

G Nikolentzos, G Siglidis, M Vazirgiannis - Journal of Artificial Intelligence …, 2021 - jair.org
Graph kernels have attracted a lot of attention during the last decade, and have evolved into
a rapidly develo** branch of learning on structured data. During the past 20 years, the …

Motif-driven contrastive learning of graph representations

S Zhang, Z Hu, A Subramonian, Y Sun - arxiv preprint arxiv:2012.12533, 2020 - arxiv.org
Pre-training Graph Neural Networks (GNN) via self-supervised contrastive learning has
recently drawn lots of attention. However, most existing works focus on node-level …