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Genomics for public health and international surveillance of antimicrobial resistance
Historically, epidemiological investigation and surveillance for bacterial antimicrobial
resistance (AMR) has relied on low-resolution isolate-based phenotypic analyses …
resistance (AMR) has relied on low-resolution isolate-based phenotypic analyses …
Precision public health in the era of genomics and big data
Precision public health (PPH) considers the interplay between genetics, lifestyle and the
environment to improve disease prevention, diagnosis and treatment on a population level …
environment to improve disease prevention, diagnosis and treatment on a population level …
Global diversity and antimicrobial resistance of typhoid fever pathogens: Insights from a meta-analysis of 13,000 Salmonella Typhi genomes
Background: The Global Typhoid Genomics Consortium was established to bring together
the typhoid research community to aggregate and analyse Salmonella enterica serovar …
the typhoid research community to aggregate and analyse Salmonella enterica serovar …
[HTML][HTML] Real-time genomic surveillance for enhanced control of infectious diseases and antimicrobial resistance
This article advocates for mobilizing pathogen genomic surveillance to contain and mitigate
health threats from infectious diseases and antimicrobial resistance (AMR), building upon …
health threats from infectious diseases and antimicrobial resistance (AMR), building upon …
The Coronavirus Standards Working Group's roadmap for improved population testing
Standards are required to ensure that population-scale testing for infectious agents is
accurate and reliable. The COVID-19 pandemic has illustrated the importance of well …
accurate and reliable. The COVID-19 pandemic has illustrated the importance of well …
Putting everything in its place: using the INSDC compliant Pathogen Data Object Model to better structure genomic data submitted for public health applications
RE Timme, I Karsch-Mizrachi, Z Waheed… - Microbial …, 2023 - microbiologyresearch.org
Fast, efficient public health actions require well-organized and coordinated systems that can
supply timely and accurate knowledge. Public databases of pathogen genomic data, such …
supply timely and accurate knowledge. Public databases of pathogen genomic data, such …
[PDF][PDF] A comprehensive, open-source data model for wastewater-based epidemiology
JD Therrien, M Thomson, ES Sion, I Lee… - Water Science & …, 2024 - iwaponline.com
The recent SARS-COV-2 pandemic has sparked the adoption of wastewater-based
epidemiology (WBE) as a low-cost way to monitor the health of populations. In parallel, the …
epidemiology (WBE) as a low-cost way to monitor the health of populations. In parallel, the …
Coordinating virus research: the virus infectious disease ontology
The COVID-19 pandemic prompted immense work on the investigation of the SARS-CoV-2
virus. Rapid, accurate, and consistent interpretation of generated data is thereby of …
virus. Rapid, accurate, and consistent interpretation of generated data is thereby of …
SARS-CoV-2 wastewater variant surveillance: pandemic response leveraging FDA's GenomeTrakr network
RE Timme, J Woods, JL Jones, KR Calci, R Rodriguez… - Msystems, 2024 - journals.asm.org
Wastewater surveillance has emerged as a crucial public health tool for population-level
pathogen surveillance. Supported by funding from the American Rescue Plan Act of 2021 …
pathogen surveillance. Supported by funding from the American Rescue Plan Act of 2021 …
The DataHarmonizer: a tool for faster data harmonization, validation, aggregation and analysis of pathogen genomics contextual information
Pathogen genomics is a critical tool for public health surveillance, infection control, outbreak
investigations as well as research. In order to make use of pathogen genomics data, they …
investigations as well as research. In order to make use of pathogen genomics data, they …