On the importance of accounting for nuclear quantum effects in ab initio calibrated force fields in biological simulations
L Pereyaslavets, I Kurnikov, G Kamath… - Proceedings of the …, 2018 - National Acad Sciences
In many important processes in chemistry, physics, and biology the nuclear degrees of
freedom cannot be described using the laws of classical mechanics. At the same time, the …
freedom cannot be described using the laws of classical mechanics. At the same time, the …
Metadynamics simulations with Bohmian‐style bias potential
DS Tikhonov - Journal of computational chemistry, 2023 - Wiley Online Library
Here, we present a parametrization of the metadynamics simulations for reactions involving
breaking the chemical bonds along a single collective variable coordinate. The …
breaking the chemical bonds along a single collective variable coordinate. The …
Reply to a Comment on “The Nature of Chalcogen‐Bonding‐Type Tellurium–Nitrogen Interactions”
YV Vishnevskiy, NW Mitzel - Angewandte Chemie International …, 2021 - Wiley Online Library
We reply to the comment by J.‐M. Mewes, A. Hansen and S. Grimme (MHG), who
challenged the accuracy of our re value for the N⋅⋅⋅ Te distance in (C6F5) Te (CH2) …
challenged the accuracy of our re value for the N⋅⋅⋅ Te distance in (C6F5) Te (CH2) …
Icosahedral carbaboranes with peripheral hydrogen–chalcogenide groups: Structures from gas electron diffraction and chemical shielding in solution
T Baše, J Holub, J Fanfrlík, D Hnyk… - … A European Journal, 2019 - Wiley Online Library
Abstract Carbaboranes 1, 2‐(EH) 2‐closo‐1, 2‐C2B10H10 (E= S, Se) were prepared, in the
case of E= Se for the first time. Their semi‐experimental equilibrium molecular structures …
case of E= Se for the first time. Their semi‐experimental equilibrium molecular structures …
Describing nuclear quantum effects in vibrational properties using molecular dynamics with Wigner sampling
DS Tikhonov, YV Vishnevskiy - Physical Chemistry Chemical Physics, 2023 - pubs.rsc.org
In this work we discuss the generally applicable Wigner sampling and introduce a new,
simplified Wigner sampling method, for computationally effective modeling of molecular …
simplified Wigner sampling method, for computationally effective modeling of molecular …
Inter‐and Intramolecular Aryl–Aryl Interactions in Partially Fluorinated Ethylenedioxy‐bridged Bisarenes
JH Weddeling, YV Vishnevskiy… - … A European Journal, 2020 - Wiley Online Library
Several ethylenedioxy‐bridged bisarenes with a variety of type and number of aryl groups
were synthesized to study non‐covalent dispersion‐driven inter‐and intramolecular aryl …
were synthesized to study non‐covalent dispersion‐driven inter‐and intramolecular aryl …
Ground electronic state multiplicity and equilibrium molecular structure of cobalt etioporphyrin-II by gas electron diffraction experiment and quantum chemical …
The study of the electronic and geometric structure of cobalt etioporphyrin-II (CoEP-II) and
parent cobalt porphyrin (CoP) molecules was carried out using density functional theory …
parent cobalt porphyrin (CoP) molecules was carried out using density functional theory …
Experimental molecular structures in the gas phase at the upper size limit: The case of Si6Tip6
YV Vishnevskiy, Y Heider… - The Journal of chemical …, 2024 - pubs.aip.org
Currently, the largest ( ra max= 19.9 Å) and by far the most complicated (234 atoms, C 1
symmetry, 696 independent geometrical parameters, and 27 261 interatomic terms) …
symmetry, 696 independent geometrical parameters, and 27 261 interatomic terms) …
Gas-phase structures of hemiporphyrazine and dicarbahemiporphyrazine: Key role of interactions inside coordination cavity
The structures of free hemiporphyrazine and dicarbahemiporphyrazine molecules were
determined by gas-phase electron diffraction and DFT calculations. Distance corrections (re …
determined by gas-phase electron diffraction and DFT calculations. Distance corrections (re …
Vibrational effect in conventional and laser-induced electron diffractions
Comprehensively and accurately characterizing matter information is the ultimate goal of
physics and chemistry, which can be achieved by conventional electron diffraction (CED) …
physics and chemistry, which can be achieved by conventional electron diffraction (CED) …