The promise and challenge of high-throughput sequencing of the antibody repertoire
Efforts to determine the antibody repertoire encoded by B cells in the blood or lymphoid
organs using high-throughput DNA sequencing technologies have been advancing at an …
organs using high-throughput DNA sequencing technologies have been advancing at an …
New concepts in the generation and functions of IgA
O Pabst - Nature Reviews Immunology, 2012 - nature.com
The intestinal mucosa contains the largest population of antibody-secreting plasma cells in
the body, and in humans several grams of secretory immunoglobulin A (SIgA) are released …
the body, and in humans several grams of secretory immunoglobulin A (SIgA) are released …
Single-cell barcoding and sequencing using droplet microfluidics
Single-cell RNA sequencing has recently emerged as a powerful tool for map** cellular
heterogeneity in diseased and healthy tissues, yet high-throughput methods are needed for …
heterogeneity in diseased and healthy tissues, yet high-throughput methods are needed for …
Single-cell analysis and sorting using droplet-based microfluidics
We present a droplet-based microfluidics protocol for high-throughput analysis and sorting
of single cells. Compartmentalization of single cells in droplets enables the analysis of …
of single cells. Compartmentalization of single cells in droplets enables the analysis of …
Microfluidic lab-on-a-chip platforms: requirements, characteristics and applications
This review summarizes recent developments in microfluidic platform approaches. In
contrast to isolated application-specific solutions, a microfluidic platform provides a set of …
contrast to isolated application-specific solutions, a microfluidic platform provides a set of …
Adaptive immune receptor repertoire analysis
B cell and T cell receptor repertoires compose the adaptive immune receptor repertoire
(AIRR) of an individual. The AIRR is a unique collection of antigen-specific receptors that …
(AIRR) of an individual. The AIRR is a unique collection of antigen-specific receptors that …
Are biological systems poised at criticality?
Many of life's most fascinating phenomena emerge from interactions among many elements—
many amino acids determine the structure of a single protein, many genes determine the …
many amino acids determine the structure of a single protein, many genes determine the …
A compact vocabulary of paratope-epitope interactions enables predictability of antibody-antigen binding
Antibody-antigen binding relies on the specific interaction of amino acids at the paratope-
epitope interface. The predictability of antibody-antigen binding is a prerequisite for de novo …
epitope interface. The predictability of antibody-antigen binding is a prerequisite for de novo …
High-throughput sequencing of the paired human immunoglobulin heavy and light chain repertoire
Each B-cell receptor consists of a pair of heavy and light chains. High-throughput
sequencing can identify large numbers of heavy-and light-chain variable regions (VH and …
sequencing can identify large numbers of heavy-and light-chain variable regions (VH and …
OLGA: fast computation of generation probabilities of B-and T-cell receptor amino acid sequences and motifs
Motivation High-throughput sequencing of large immune repertoires has enabled the
development of methods to predict the probability of generation by V (D) J recombination of …
development of methods to predict the probability of generation by V (D) J recombination of …