Cross-linking mass spectrometry (XL-MS): an emerging technology for interactomics and structural biology

C Yu, L Huang - Analytical chemistry, 2017 - pmc.ncbi.nlm.nih.gov
Protein-protein interactions are fundamental to the formation of intricate interaction networks
and the assembly of multisubunit protein complexes that represent the functional …

Formaldehyde crosslinking: a tool for the study of chromatin complexes

EA Hoffman, BL Frey, LM Smith, DT Auble - Journal of Biological Chemistry, 2015 - jbc.org
Formaldehyde has been used for decades to probe macromolecular structure and function
and to trap complexes, cells, and tissues for further analysis. Formaldehyde crosslinking is …

DHX9 suppresses RNA processing defects originating from the Alu invasion of the human genome

T Aktaş, İ Avşar Ilık, D Maticzka, V Bhardwaj… - Nature, 2017 - nature.com
Transposable elements are viewed as 'selfish genetic elements', yet they contribute to gene
regulation and genome evolution in diverse ways. More than half of the human genome …

Systematic and quantitative assessment of the ubiquitin-modified proteome

W Kim, EJ Bennett, EL Huttlin, A Guo, J Li… - Molecular cell, 2011 - cell.com
Despite the diverse biological pathways known to be regulated by ubiquitylation, global
identification of substrates that are targeted for ubiquitylation has remained a challenge. To …

Streptavidin–biotin technology: improvements and innovations in chemical and biological applications

CM Dundas, D Demonte, S Park - Applied microbiology and biotechnology, 2013 - Springer
Streptavidin and its homologs (together referred to as streptavidin) are widely used in
molecular science owing to their highly selective and stable interaction with biotin. Other …

A proximity-tagging system to identify membrane protein–protein interactions

Q Liu, J Zheng, W Sun, Y Huo, L Zhang, P Hao… - Nature …, 2018 - nature.com
The communication between cells and between cellular organelles is often controlled by the
interaction of membrane proteins. Although many methods for the detection of protein …

Transient protein-protein interactions: structural, functional, and network properties

JR Perkins, I Diboun, BH Dessailly, JG Lees, C Orengo - Structure, 2010 - cell.com
Transient interactions, which involve protein interactions that are formed and broken easily,
are important in many aspects of cellular function. Here we describe structural and functional …

The cullin-RING ubiquitin-protein ligases

Z Hua, RD Vierstra - Annual review of plant biology, 2011 - annualreviews.org
The posttranslational addition of ubiquitin (Ub) helps control the half-life, localization, and
action of many intracellular plant proteins. A primary function is the degradation of …

ERF115 controls root quiescent center cell division and stem cell replenishment

J Heyman, T Cools, F Vandenbussche, KS Heyndrickx… - Science, 2013 - science.org
The quiescent center (QC) plays an essential role during root development by creating a
microenvironment that preserves the stem cell fate of its surrounding cells. Despite being …

The Ubiquitin–Proteasome System of Saccharomyces cerevisiae

D Finley, HD Ulrich, T Sommer, P Kaiser - Genetics, 2012 - academic.oup.com
Protein modifications provide cells with exquisite temporal and spatial control of protein
function. Ubiquitin is among the most important modifiers, serving both to target hundreds of …