Transposable elements in cancer

KH Burns - Nature Reviews Cancer, 2017 - nature.com
Transposable elements give rise to interspersed repeats, sequences that comprise most of
our genomes. These mobile DNAs have been historically underappreciated—both because …

Computational tools to unmask transposable elements

P Goerner-Potvin, G Bourque - Nature Reviews Genetics, 2018 - nature.com
A substantial proportion of the genome of many species is derived from transposable
elements (TEs). Moreover, through various self-copying mechanisms, TEs continue to …

Integration site selection by retroviruses and transposable elements in eukaryotes

T Sultana, A Zamborlini, G Cristofari… - Nature Reviews …, 2017 - nature.com
Transposable elements and retroviruses are found in most genomes, can be pathogenic
and are widely used as gene-delivery and functional genomics tools. Exploring whether …

The human long interspersed element-1 retrotransposon: an emerging biomarker of neoplasia

D Ardeljan, MS Taylor, DT Ting, KH Burns - Clinical chemistry, 2017 - academic.oup.com
BACKGROUND A large portion of intronic and intergenic space in our genome consists of
repeated sequences. One of the most prevalent is the long interspersed element-1 (LINE-1 …

A comprehensive approach to expression of L1 loci

P Deininger, ME Morales, TB White… - Nucleic acids …, 2017 - academic.oup.com
L1 elements represent the only currently active, autonomous retrotransposon in the human
genome, and they make major contributions to human genetic instability. The vast majority of …

Human transposon insertion profiling: analysis, visualization and identification of somatic LINE-1 insertions in ovarian cancer

Z Tang, JP Steranka, S Ma… - Proceedings of the …, 2017 - National Acad Sciences
Mammalian genomes are replete with interspersed repeats reflecting the activity of
transposable elements. These mobile DNAs are self-propagating, and their continued …

Repetitive elements in humans

T Liehr - International journal of molecular sciences, 2021 - mdpi.com
Repetitive DNA in humans is still widely considered to be meaningless, and variations within
this part of the genome are generally considered to be harmless to the carrier. In contrast, for …

The evolution of LINE-1 in vertebrates

S Boissinot, A Sookdeo - Genome biology and evolution, 2016 - academic.oup.com
The abundance and diversity of the LINE-1 (L1) retrotransposon differ greatly among
vertebrates. Mammalian genomes contain hundreds of thousands L1s that have …

Human Endogenous Retrovirus-K (HML-2)-Related Genetic Variation: Human Genome Diversity and Disease

W Shin, S Mun, K Han - Genes, 2023 - mdpi.com
Human endogenous retroviruses (HERVs) comprise a significant portion of the human
genome, making up roughly 8%, a notable comparison to the 2–3% represented by coding …

Vitamin C activates young LINE-1 elements in mouse embryonic stem cells via H3K9me3 demethylation

KCL Cheng, JM Frost, FJ Sánchez-Luque… - Epigenetics & …, 2023 - Springer
Abstract Background Vitamin C (vitC) enhances the activity of 2-oxoglutarate-dependent
dioxygenases, including TET enzymes, which catalyse DNA demethylation, and Jumonji …