Coalescent-based species delimitation in an integrative taxonomy

MK Fujita, AD Leaché, FT Burbrink, JA McGuire… - Trends in ecology & …, 2012 - cell.com
The statistical rigor of species delimitation has increased dramatically over the past decade.
Coalescent theory provides powerful models for population genetic inference, and is now …

Rodent systematics in an age of discovery: recent advances and prospects

G D'Elía, PH Fabre, EP Lessa - Journal of Mammalogy, 2019 - academic.oup.com
Abstract With almost 2,600 species, Rodentia is the most diverse order of mammals. Here,
we provide an overview of changes in our understanding of the systematics of living rodents …

Multispecies coalescent delimits structure, not species

J Sukumaran, LL Knowles - Proceedings of the National Academy of …, 2017 - pnas.org
The multispecies coalescent model underlies many approaches used for species
delimitation. In previous work assessing the performance of species delimitation under this …

[Књига][B] Genetic management of fragmented animal and plant populations

R Frankham, JD Ballou, K Ralls, M Eldridge… - 2017 - books.google.com
One of the greatest unmet challenges in conservation biology is the genetic management of
fragmented populations of threatened animal and plant species. More than a million small …

Comparison of methods for molecular species delimitation across a range of speciation scenarios

A Luo, C Ling, SYW Ho, CD Zhu - Systematic Biology, 2018 - academic.oup.com
Species are fundamental units in biological research and can be defined on the basis of
various operational criteria. There has been growing use of molecular approaches for …

The BPP program for species tree estimation and species delimitation

Z Yang - Current Zoology, 2015 - academic.oup.com
This paper provides an overview and a tutorial of the BPP program, which is a Bayesian
MCMC program for analyzing multi-locus genomic sequence data under the multispecies …

Unguided species delimitation using DNA sequence data from multiple loci

Z Yang, B Rannala - Molecular Biology and Evolution, 2014 - academic.oup.com
A method was developed for simultaneous Bayesian inference of species delimitation and
species phylogeny using the multispecies coalescent model. The method eliminates the …

The spectre of too many species

AD Leaché, T Zhu, B Rannala, Z Yang - Systematic Biology, 2019 - academic.oup.com
Recent simulation studies examining the performance of Bayesian species delimitation as
implemented in the bpp program have suggested that bpp may detect population splits but …

How to describe a cryptic species? Practical challenges of molecular taxonomy

KM Jörger, M Schrödl - Frontiers in zoology, 2013 - Springer
Background Molecular methods of species delineation are rapidly develo** and widely
considered as fast and efficient means to discover species and face the'taxonomic …

Species delimitation with gene flow

ND Jackson, BC Carstens, AE Morales… - Systematic …, 2017 - academic.oup.com
Species are commonly thought to be evolutionarily independent in a way that populations
within a species are not. In recent years, studies that seek to identify evolutionarily …