RNA structural dynamics as captured by molecular simulations: a comprehensive overview

J Sponer, G Bussi, M Krepl, P Banáš, S Bottaro… - Chemical …, 2018 - ACS Publications
With both catalytic and genetic functions, ribonucleic acid (RNA) is perhaps the most
pluripotent chemical species in molecular biology, and its functions are intimately linked to …

Novel insights into double-stranded RNA-mediated immunopathology

R de Reuver, J Maelfait - Nature Reviews Immunology, 2024 - nature.com
Recent progress in human and mouse genetics has transformed our understanding of the
molecular mechanisms by which recognition of self double-stranded RNA (self-dsRNA) …

The competitive landscape of the dsRNA world

KA Cottrell, RJ Andrews, BL Bass - Molecular Cell, 2024 - cell.com
The ability to sense and respond to infection is essential for life. Viral infection produces
double-stranded RNAs (dsRNAs) that are sensed by proteins that recognize the structure of …

Inhibition of RNA-binding proteins with small molecules

P Wu - Nature Reviews Chemistry, 2020 - nature.com
Protein–RNA interactions have crucial roles in various cellular activities, which, when
dysregulated, can lead to a range of human diseases. The identification of small molecules …

Mono-uridylation of pre-microRNA as a key step in the biogenesis of group II let-7 microRNAs

I Heo, M Ha, J Lim, MJ Yoon, JE Park, SC Kwon… - Cell, 2012 - cell.com
Summary RNase III Drosha initiates microRNA (miRNA) maturation by cleaving a primary
miRNA transcript and releasing a pre-miRNA with a 2 nt 3′ overhang. Dicer recognizes the …

The RNA silencing endonuclease Argonaute 2 mediates specific antiviral immunity in Drosophila melanogaster

RP Van Rij, MC Saleh, B Berry, C Foo… - Genes & …, 2006 - genesdev.cshlp.org
Most organisms have evolved defense mechanisms to protect themselves from viruses and
other pathogens. Arthropods lack the protein-based adaptive immune response found in …

Genetic association studies: design, analysis and interpretation

CM Lewis - Briefings in bioinformatics, 2002 - academic.oup.com
This paper provides a review of the design and analysis of genetic association studies. In
case control studies, the different contingency tables and their relationships to the …

Crystal structure of human toll-like receptor 3 (TLR3) ectodomain

J Choe, MS Kelker, IA Wilson - Science, 2005 - science.org
Toll-like receptors (TLRs) play key roles in activating immune responses during infection.
The human TLR3 ectodomain structure at 2.1 angstroms reveals a large horseshoe-shaped …

RNA recognition by double-stranded RNA binding domains: a matter of shape and sequence

G Masliah, P Barraud, FHT Allain - Cellular and molecular life sciences, 2013 - Springer
The double-stranded RNA binding domain (dsRBD) is a small protein domain of 65–70
amino acids adopting an αβββα fold, whose central property is to bind to double-stranded …

Efficient siRNA delivery into primary cells by a peptide transduction domain–dsRNA binding domain fusion protein

A Eguchi, BR Meade, YC Chang, CT Fredrickson… - Nature …, 2009 - nature.com
RNA interference (RNAi) induced by short interfering RNA (siRNA) allows for discovery
research and large-scale screening,,,,; however, owing to their size and anionic charge …