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RNA sequencing: the teenage years
Over the past decade, RNA sequencing (RNA-seq) has become an indispensable tool for
transcriptome-wide analysis of differential gene expression and differential splicing of …
transcriptome-wide analysis of differential gene expression and differential splicing of …
T cell repertoire profiling and the mechanism by which HLA-B27 causes ankylosing spondylitis
Abstract Purpose of Review Ankylosing spondylitis (AS) is strongly associated with the HLA-
B27 gene. The canonical function of HLA-B27 is to present antigenic peptides to CD8 …
B27 gene. The canonical function of HLA-B27 is to present antigenic peptides to CD8 …
Overview of methodologies for T-cell receptor repertoire analysis
Background The T-cell receptor (TCR), located on the surface of T cells, is responsible for
the recognition of the antigen-major histocompatibility complex, leading to the initiation of an …
the recognition of the antigen-major histocompatibility complex, leading to the initiation of an …
Quantitative assessment of single-cell RNA-sequencing methods
Interest in single-cell whole-transcriptome analysis is growing rapidly, especially for profiling
rare or heterogeneous populations of cells. We compared commercially available single-cell …
rare or heterogeneous populations of cells. We compared commercially available single-cell …
Age-related decrease in TCR repertoire diversity measured with deep and normalized sequence profiling
The decrease of TCR diversity with aging has never been studied by direct methods. In this
study, we combined high-throughput Illumina sequencing with unique cDNA molecular …
study, we combined high-throughput Illumina sequencing with unique cDNA molecular …
Fluorescent proteins from nonbioluminescent Anthozoa species
We have cloned six fluorescent proteins homologous to the green fluorescent protein (GFP)
from Aequorea victoria. Two of these have spectral characteristics dramatically different from …
from Aequorea victoria. Two of these have spectral characteristics dramatically different from …
Stem cell transcriptome profiling via massive-scale mRNA sequencing
We developed a massive-scale RNA sequencing protocol, short quantitative random RNA
libraries or SQRL, to survey the complexity, dynamics and sequence content of …
libraries or SQRL, to survey the complexity, dynamics and sequence content of …
Double-stranded RNA-mediated silencing of genomic tandem repeats and transposable elements in the D. melanogaster germline
Background: The injection of double-stranded RNA (dsRNA) has been shown to induce a
potent sequence-specific inhibition of gene function in diverse invertebrate and vertebrate …
potent sequence-specific inhibition of gene function in diverse invertebrate and vertebrate …
Profiling gene expression responses of coral larvae (Acropora millepora) to elevated temperature and settlement inducers using a novel RNA‐Seq procedure
Elevated temperatures resulting from climate change pose a clear threat to reef‐building
corals; however, the traits that might influence corals' survival and dispersal during climate …
corals; however, the traits that might influence corals' survival and dispersal during climate …
Nanopore sequencing of RNA and cDNA molecules in Escherichia coli
High-throughput sequencing dramatically changed our view of transcriptome architectures
and allowed for ground-breaking discoveries in RNA biology. Recently, sequencing of full …
and allowed for ground-breaking discoveries in RNA biology. Recently, sequencing of full …