RNA sequencing: the teenage years

R Stark, M Grzelak, J Hadfield - Nature Reviews Genetics, 2019 - nature.com
Over the past decade, RNA sequencing (RNA-seq) has become an indispensable tool for
transcriptome-wide analysis of differential gene expression and differential splicing of …

T cell repertoire profiling and the mechanism by which HLA-B27 causes ankylosing spondylitis

J Garrido-Mesa, MA Brown - Current rheumatology reports, 2022 - Springer
Abstract Purpose of Review Ankylosing spondylitis (AS) is strongly associated with the HLA-
B27 gene. The canonical function of HLA-B27 is to present antigenic peptides to CD8 …

Overview of methodologies for T-cell receptor repertoire analysis

E Rosati, CM Dowds, E Liaskou, EKK Henriksen… - BMC …, 2017 - Springer
Background The T-cell receptor (TCR), located on the surface of T cells, is responsible for
the recognition of the antigen-major histocompatibility complex, leading to the initiation of an …

Quantitative assessment of single-cell RNA-sequencing methods

AR Wu, NF Neff, T Kalisky, P Dalerba, B Treutlein… - Nature …, 2014 - nature.com
Interest in single-cell whole-transcriptome analysis is growing rapidly, especially for profiling
rare or heterogeneous populations of cells. We compared commercially available single-cell …

Age-related decrease in TCR repertoire diversity measured with deep and normalized sequence profiling

OV Britanova, EV Putintseva, M Shugay… - The Journal of …, 2014 - journals.aai.org
The decrease of TCR diversity with aging has never been studied by direct methods. In this
study, we combined high-throughput Illumina sequencing with unique cDNA molecular …

Fluorescent proteins from nonbioluminescent Anthozoa species

MV Matz, AF Fradkov, YA Labas, AP Savitsky… - Nature …, 1999 - nature.com
We have cloned six fluorescent proteins homologous to the green fluorescent protein (GFP)
from Aequorea victoria. Two of these have spectral characteristics dramatically different from …

Stem cell transcriptome profiling via massive-scale mRNA sequencing

N Cloonan, ARR Forrest, G Kolle, BBA Gardiner… - Nature …, 2008 - nature.com
We developed a massive-scale RNA sequencing protocol, short quantitative random RNA
libraries or SQRL, to survey the complexity, dynamics and sequence content of …

Double-stranded RNA-mediated silencing of genomic tandem repeats and transposable elements in the D. melanogaster germline

AA Aravin, NM Naumova, AV Tulin, VV Vagin… - Current Biology, 2001 - cell.com
Background: The injection of double-stranded RNA (dsRNA) has been shown to induce a
potent sequence-specific inhibition of gene function in diverse invertebrate and vertebrate …

Profiling gene expression responses of coral larvae (Acropora millepora) to elevated temperature and settlement inducers using a novel RNA‐Seq procedure

E Meyer, GV Aglyamova, MV Matz - Molecular ecology, 2011 - Wiley Online Library
Elevated temperatures resulting from climate change pose a clear threat to reef‐building
corals; however, the traits that might influence corals' survival and dispersal during climate …

Nanopore sequencing of RNA and cDNA molecules in Escherichia coli

F Grünberger, S Ferreira-Cerca, D Grohmann - Rna, 2022 - rnajournal.cshlp.org
High-throughput sequencing dramatically changed our view of transcriptome architectures
and allowed for ground-breaking discoveries in RNA biology. Recently, sequencing of full …