RNA sequencing: the teenage years
Over the past decade, RNA sequencing (RNA-seq) has become an indispensable tool for
transcriptome-wide analysis of differential gene expression and differential splicing of …
transcriptome-wide analysis of differential gene expression and differential splicing of …
T cell repertoire profiling and the mechanism by which HLA-B27 causes ankylosing spondylitis
J Garrido-Mesa, MA Brown - Current rheumatology reports, 2022 - Springer
Abstract Purpose of Review Ankylosing spondylitis (AS) is strongly associated with the HLA-
B27 gene. The canonical function of HLA-B27 is to present antigenic peptides to CD8 …
B27 gene. The canonical function of HLA-B27 is to present antigenic peptides to CD8 …
Overview of methodologies for T-cell receptor repertoire analysis
Background The T-cell receptor (TCR), located on the surface of T cells, is responsible for
the recognition of the antigen-major histocompatibility complex, leading to the initiation of an …
the recognition of the antigen-major histocompatibility complex, leading to the initiation of an …
Quantitative assessment of single-cell RNA-sequencing methods
Interest in single-cell whole-transcriptome analysis is growing rapidly, especially for profiling
rare or heterogeneous populations of cells. We compared commercially available single-cell …
rare or heterogeneous populations of cells. We compared commercially available single-cell …
Age-related decrease in TCR repertoire diversity measured with deep and normalized sequence profiling
OV Britanova, EV Putintseva, M Shugay… - The Journal of …, 2014 - journals.aai.org
The decrease of TCR diversity with aging has never been studied by direct methods. In this
study, we combined high-throughput Illumina sequencing with unique cDNA molecular …
study, we combined high-throughput Illumina sequencing with unique cDNA molecular …
Fluorescent proteins from nonbioluminescent Anthozoa species
MV Matz, AF Fradkov, YA Labas, AP Savitsky… - Nature …, 1999 - nature.com
We have cloned six fluorescent proteins homologous to the green fluorescent protein (GFP)
from Aequorea victoria. Two of these have spectral characteristics dramatically different from …
from Aequorea victoria. Two of these have spectral characteristics dramatically different from …
Stem cell transcriptome profiling via massive-scale mRNA sequencing
N Cloonan, ARR Forrest, G Kolle, BBA Gardiner… - Nature …, 2008 - nature.com
We developed a massive-scale RNA sequencing protocol, short quantitative random RNA
libraries or SQRL, to survey the complexity, dynamics and sequence content of …
libraries or SQRL, to survey the complexity, dynamics and sequence content of …
Double-stranded RNA-mediated silencing of genomic tandem repeats and transposable elements in the D. melanogaster germline
Background: The injection of double-stranded RNA (dsRNA) has been shown to induce a
potent sequence-specific inhibition of gene function in diverse invertebrate and vertebrate …
potent sequence-specific inhibition of gene function in diverse invertebrate and vertebrate …
Profiling gene expression responses of coral larvae (Acropora millepora) to elevated temperature and settlement inducers using a novel RNA‐Seq procedure
Elevated temperatures resulting from climate change pose a clear threat to reef‐building
corals; however, the traits that might influence corals' survival and dispersal during climate …
corals; however, the traits that might influence corals' survival and dispersal during climate …
Nanopore sequencing of RNA and cDNA molecules in Escherichia coli
High-throughput sequencing dramatically changed our view of transcriptome architectures
and allowed for ground-breaking discoveries in RNA biology. Recently, sequencing of full …
and allowed for ground-breaking discoveries in RNA biology. Recently, sequencing of full …