Deep generative molecular design reshapes drug discovery

X Zeng, F Wang, Y Luo, S Kang, J Tang… - Cell Reports …, 2022 - cell.com
Recent advances and accomplishments of artificial intelligence (AI) and deep generative
models have established their usefulness in medicinal applications, especially in drug …

Geometric deep learning for drug discovery

M Liu, C Li, R Chen, D Cao, X Zeng - Expert Systems with Applications, 2024 - Elsevier
Drug discovery is a time-consuming and expensive process. With the development of
Artificial Intelligence (AI) techniques, molecular Geometric Deep Learning (GDL) has …

Equivariant diffusion for molecule generation in 3d

E Hoogeboom, VG Satorras… - … on machine learning, 2022 - proceedings.mlr.press
This work introduces a diffusion model for molecule generation in 3D that is equivariant to
Euclidean transformations. Our E (3) Equivariant Diffusion Model (EDM) learns to denoise a …

Uni-mol: A universal 3d molecular representation learning framework

G Zhou, Z Gao, Q Ding, H Zheng, H Xu, Z Wei, L Zhang… - 2023 - chemrxiv.org
Molecular representation learning (MRL) has gained tremendous attention due to its critical
role in learning from limited supervised data for applications like drug design. In most MRL …

Torsional diffusion for molecular conformer generation

B **g, G Corso, J Chang… - Advances in neural …, 2022 - proceedings.neurips.cc
Molecular conformer generation is a fundamental task in computational chemistry. Several
machine learning approaches have been developed, but none have outperformed state-of …

Equivariant 3D-conditional diffusion model for molecular linker design

I Igashov, H Stärk, C Vignac, A Schneuing… - Nature Machine …, 2024 - nature.com
Fragment-based drug discovery has been an effective paradigm in early-stage drug
development. An open challenge in this area is designing linkers between disconnected …

Geodiff: A geometric diffusion model for molecular conformation generation

M Xu, L Yu, Y Song, C Shi, S Ermon, J Tang - arxiv preprint arxiv …, 2022 - arxiv.org
Predicting molecular conformations from molecular graphs is a fundamental problem in
cheminformatics and drug discovery. Recently, significant progress has been achieved with …

Artificial intelligence for science in quantum, atomistic, and continuum systems

X Zhang, L Wang, J Helwig, Y Luo, C Fu, Y **e… - arxiv preprint arxiv …, 2023 - arxiv.org
Advances in artificial intelligence (AI) are fueling a new paradigm of discoveries in natural
sciences. Today, AI has started to advance natural sciences by improving, accelerating, and …

ResGen is a pocket-aware 3D molecular generation model based on parallel multiscale modelling

O Zhang, J Zhang, J **, X Zhang, RL Hu… - Nature Machine …, 2023 - nature.com
Most molecular generative models based on artificial intelligence for de novo drug design
are ligand-centric and do not consider the detailed three-dimensional geometries of protein …

Diffusion-based molecule generation with informative prior bridges

L Wu, C Gong, X Liu, M Ye… - Advances in neural …, 2022 - proceedings.neurips.cc
AI-based molecule generation provides a promising approach to a large area of biomedical
sciences and engineering, such as antibody design, hydrolase engineering, or vaccine …