Quantitative mass spectrometry-based proteomics: an overview

S Rozanova, K Barkovits, M Nikolov, C Schmidt… - Quantitative methods in …, 2021 - Springer
In recent decades, mass spectrometry has moved more than ever before into the front line of
protein-centered research. After being established at the qualitative level, the more …

Bioinformatics methods for mass spectrometry-based proteomics data analysis

C Chen, J Hou, JJ Tanner, J Cheng - International journal of molecular …, 2020 - mdpi.com
Recent advances in mass spectrometry (MS)-based proteomics have enabled tremendous
progress in the understanding of cellular mechanisms, disease progression, and the …

Protein analysis by shotgun/bottom-up proteomics

Y Zhang, BR Fonslow, B Shan, MC Baek… - Chemical …, 2013 - ACS Publications
According to Genome Sequencing Project statistics (http://www. ncbi. nlm. nih.
gov/genomes/static/gpstat. html), as of February 16, 2012, complete gene sequences have …

Quantitative proteomics using isobaric labeling: a practical guide

X Chen, Y Sun, T Zhang, L Shu… - Genomics …, 2021 - academic.oup.com
In the past decade, relative proteomic quantification using isobaric labeling technology has
developed into a key tool for comparing the expression of proteins in biological samples …

Selected reaction monitoring–based proteomics: workflows, potential, pitfalls and future directions

P Picotti, R Aebersold - Nature methods, 2012 - nature.com
Selected reaction monitoring (SRM) is a targeted mass spectrometry technique that is
emerging in the field of proteomics as a complement to untargeted shotgun methods. SRM is …

Selected reaction monitoring for quantitative proteomics: a tutorial

V Lange, P Picotti, B Domon… - Molecular systems …, 2008 - embopress.org
Systems biology relies on data sets in which the same group of proteins is consistently
identified and precisely quantified across multiple samples, a requirement that is only …

Quantitative mass spectrometry in proteomics: a critical review

M Bantscheff, M Schirle, G Sweetman, J Rick… - Analytical and …, 2007 - Springer
The quantification of differences between two or more physiological states of a biological
system is among the most important but also most challenging technical tasks in proteomics …

Stable isotope labelling methods in mass spectrometry-based quantitative proteomics

O Chahrour, D Cobice, J Malone - Journal of pharmaceutical and …, 2015 - Elsevier
Mass-spectrometry based proteomics has evolved as a promising technology over the last
decade and is undergoing a dramatic development in a number of different areas, such as; …

An assessment of software solutions for the analysis of mass spectrometry based quantitative proteomics data

LN Mueller, MY Brusniak, DR Mani… - Journal of proteome …, 2008 - ACS Publications
Over the past decade, a series of experimental strategies for mass spectrometry based
quantitative proteomics and corresponding computational methodology for the processing of …

SuperHirn – a novel tool for high resolution LC‐MS‐based peptide/protein profiling

LN Mueller, O Rinner, A Schmidt, S Letarte… - …, 2007 - Wiley Online Library
Label‐free quantification of high mass resolution LC‐MS data has emerged as a promising
technology for proteome analysis. Computational methods are required for the accurate …