The eXtensible ontology development (XOD) principles and tool implementation to support ontology interoperability
Ontologies are critical to data/metadata and knowledge standardization, sharing, and
analysis. With hundreds of biological and biomedical ontologies developed, it has become …
analysis. With hundreds of biological and biomedical ontologies developed, it has become …
Knowledge-based biomedical data science
Knowledge-based biomedical data science involves the design and implementation of
computer systems that act as if they knew about biomedicine. Such systems depend on …
computer systems that act as if they knew about biomedicine. Such systems depend on …
The Monarch Initiative: an integrative data and analytic platform connecting phenotypes to genotypes across species
The correlation of phenotypic outcomes with genetic variation and environmental factors is a
core pursuit in biology and biomedicine. Numerous challenges impede our progress: patient …
core pursuit in biology and biomedicine. Numerous challenges impede our progress: patient …
The computer science ontology: a large-scale taxonomy of research areas
Ontologies of research areas are important tools for characterising, exploring, and analysing
the research landscape. Some fields of research are comprehensively described by large …
the research landscape. Some fields of research are comprehensively described by large …
Neuro-symbolic representation learning on biological knowledge graphs
Motivation Biological data and knowledge bases increasingly rely on Semantic Web
technologies and the use of knowledge graphs for data integration, retrieval and federated …
technologies and the use of knowledge graphs for data integration, retrieval and federated …
An open source knowledge graph ecosystem for the life sciences
Translational research requires data at multiple scales of biological organization.
Advancements in sequencing and multi-omics technologies have increased the availability …
Advancements in sequencing and multi-omics technologies have increased the availability …
An ontology-based knowledge graph for representing interactions involving RNA molecules
The “RNA world” represents a novel frontier for the study of fundamental biological
processes and human diseases and is paving the way for the development of new drugs …
processes and human diseases and is paving the way for the development of new drugs …
The computer science ontology: A comprehensive automatically-generated taxonomy of research areas
Ontologies of research areas are important tools for characterizing, exploring, and analyzing
the research landscape. Some fields of research are comprehensively described by large …
the research landscape. Some fields of research are comprehensively described by large …
An ontology-guided semantic data integration framework to support integrative data analysis of cancer survival
Background Cancer is the second leading cause of death in the United States, exceeded
only by heart disease. Extant cancer survival analyses have primarily focused on individual …
only by heart disease. Extant cancer survival analyses have primarily focused on individual …
RTX-KG2: a system for building a semantically standardized knowledge graph for translational biomedicine
Background Biomedical translational science is increasingly using computational reasoning
on repositories of structured knowledge (such as UMLS, SemMedDB, ChEMBL, Reactome …
on repositories of structured knowledge (such as UMLS, SemMedDB, ChEMBL, Reactome …