[HTML][HTML] Multi-omics of the gut microbial ecosystem in inflammatory bowel diseases
Inflammatory bowel diseases, which include Crohn's disease and ulcerative colitis, affect
several million individuals worldwide. Crohn's disease and ulcerative colitis are complex …
several million individuals worldwide. Crohn's disease and ulcerative colitis are complex …
Best practices for analysing microbiomes
Complex microbial communities shape the dynamics of various environments, ranging from
the mammalian gastrointestinal tract to the soil. Advances in DNA sequencing technologies …
the mammalian gastrointestinal tract to the soil. Advances in DNA sequencing technologies …
Gut bacteria selectively promoted by dietary fibers alleviate type 2 diabetes
The gut microbiota benefits humans via short-chain fatty acid (SCFA) production from
carbohydrate fermentation, and deficiency in SCFA production is associated with type 2 …
carbohydrate fermentation, and deficiency in SCFA production is associated with type 2 …
Species-level functional profiling of metagenomes and metatranscriptomes
Functional profiles of microbial communities are typically generated using comprehensive
metagenomic or metatranscriptomic sequence read searches, which are time-consuming …
metagenomic or metatranscriptomic sequence read searches, which are time-consuming …
Diet rapidly and reproducibly alters the human gut microbiome
Long-term dietary intake influences the structure and activity of the trillions of
microorganisms residing in the human gut,,,,, but it remains unclear how rapidly and …
microorganisms residing in the human gut,,,,, but it remains unclear how rapidly and …
Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences
Profiling phylogenetic marker genes, such as the 16S rRNA gene, is a key tool for studies of
microbial communities but does not provide direct evidence of a community's functional …
microbial communities but does not provide direct evidence of a community's functional …
The integrative human microbiome project
HMP Integrative, LM Proctor, HH Creasy… - …, 2019 - ui.adsabs.harvard.edu
Abstract The NIH Human Microbiome Project (HMP) has been carried out over ten years and
two phases to provide resources, methods, and discoveries that link interactions between …
two phases to provide resources, methods, and discoveries that link interactions between …
The role of short-chain fatty acids in the interplay between diet, gut microbiota, and host energy metabolism
G Den Besten, K Van Eunen, AK Groen, K Venema… - Journal of lipid …, 2013 - ASBMB
Short-chain fatty acids (SCFAs), the end products of fermentation of dietary fibers by the
anaerobic intestinal microbiota, have been shown to exert multiple beneficial effects on …
anaerobic intestinal microbiota, have been shown to exert multiple beneficial effects on …
The healthy human microbiome
Humans are virtually identical in their genetic makeup, yet the small differences in our DNA
give rise to tremendous phenotypic diversity across the human population. By contrast, the …
give rise to tremendous phenotypic diversity across the human population. By contrast, the …
Structure, function and diversity of the healthy human microbiome
nature, 2012 - nature.com
Studies of the human microbiome have revealed that even healthy individuals differ
remarkably in the microbes that occupy habitats such as the gut, skin and vagina. Much of …
remarkably in the microbes that occupy habitats such as the gut, skin and vagina. Much of …