Mechanism and Regulation of Protein Synthesis in Saccharomyces cerevisiae

TE Dever, TG Kinzy, GD Pavitt - Genetics, 2016 - academic.oup.com
In this review, we provide an overview of protein synthesis in the yeast Saccharomyces
cerevisiae. The mechanism of protein synthesis is well conserved between yeast and other …

The growing toolbox for protein synthesis studies

S Iwasaki, NT Ingolia - Trends in biochemical sciences, 2017 - cell.com
Protein synthesis stands at the last stage of the central dogma of molecular biology,
providing a final regulatory layer for gene expression. Reacting to environmental cues and …

Ribosome profiling reveals pervasive translation outside of annotated protein-coding genes

NT Ingolia, GA Brar, N Stern-Ginossar, MS Harris… - Cell reports, 2014 - cell.com
Ribosome profiling suggests that ribosomes occupy many regions of the transcriptome
thought to be noncoding, including 5′ UTRs and long noncoding RNAs (lncRNAs) …

Heterogeneous ribosomes preferentially translate distinct subpools of mRNAs genome-wide

Z Shi, K Fujii, KM Kovary, NR Genuth, HL Röst… - Molecular cell, 2017 - cell.com
Emerging studies have linked the ribosome to more selective control of gene regulation.
However, an outstanding question is whether ribosome heterogeneity at the level of core …

Dynamics of ribosome scanning and recycling revealed by translation complex profiling

SK Archer, NE Shirokikh, TH Beilharz, T Preiss - Nature, 2016 - nature.com
Regulation of messenger RNA translation is central to eukaryotic gene expression control.
Regulatory inputs are specified by the mRNA untranslated regions (UTRs) and often target …

Selective translation complex profiling reveals staged initiation and co-translational assembly of initiation factor complexes

S Wagner, A Herrmannová, V Hronová, S Gunišová… - Molecular cell, 2020 - cell.com
Translational control targeting the initiation phase is central to the regulation of gene
expression. Understanding all of its aspects requires substantial technological …

[HTML][HTML] A translation-like cycle is a quality control checkpoint for maturing 40S ribosome subunits

BS Strunk, MN Novak, CL Young, K Karbstein - Cell, 2012 - cell.com
Assembly factors (AFs) prevent premature translation initiation on small (40S) ribosomal
subunit assembly intermediates by blocking ligand binding. However, it is unclear how AFs …

Regulated formation of an amyloid-like translational repressor governs gametogenesis

LE Berchowitz, G Kabachinski, MR Walker, TM Carlile… - Cell, 2015 - cell.com
Message-specific translational control is required for gametogenesis. In yeast, the RNA-
binding protein Rim4 mediates translational repression of numerous mRNAs, including the …

Ribosomal RNA 2′-O-methylations regulate translation by impacting ribosome dynamics

S Khoshnevis, RE Dreggors-Walker… - Proceedings of the …, 2022 - National Acad Sciences
Protein synthesis by ribosomes is critically important for gene expression in all cells.
Ribosomal RNAs (rRNAs) are marked by numerous chemical modifications. An abundant …

PABP enhances release factor recruitment and stop codon recognition during translation termination

A Ivanov, T Mikhailova, B Eliseev… - Nucleic acids …, 2016 - academic.oup.com
Abstract Poly (A)-binding protein (PABP) is a major component of the messenger RNA–
protein complex. PABP is able to bind the poly (A) tail of mRNA, as well as translation …