Web-based multi-omics integration using the Analyst software suite

JD Ewald, G Zhou, Y Lu, J Kolic, C Ellis, JD Johnson… - Nature …, 2024 - nature.com
The growing number of multi-omics studies demands clear conceptual workflows coupled
with easy-to-use software tools to facilitate data analysis and interpretation. This protocol …

State of the field in multi-omics research: from computational needs to data mining and sharing

M Krassowski, V Das, SK Sahu, BB Misra - Frontiers in Genetics, 2020 - frontiersin.org
Multi-omics, variously called integrated omics, pan-omics, and trans-omics, aims to combine
two or more omics data sets to aid in data analysis, visualization and interpretation to …

Missing data in multi-omics integration: Recent advances through artificial intelligence

JE Flores, DM Claborne, ZD Weller… - Frontiers in artificial …, 2023 - frontiersin.org
Biological systems function through complex interactions between various 'omics
(biomolecules), and a more complete understanding of these systems is only possible …

Integrated omics: tools, advances and future approaches

BB Misra, C Langefeld, M Olivier… - Journal of molecular …, 2019 - jme.bioscientifica.com
With the rapid adoption of high-throughput omic approaches to analyze biological samples
such as genomics, transcriptomics, proteomics, and metabolomics, each analysis can …

From big data analysis to personalized medicine for all: challenges and opportunities

A Alyass, M Turcotte, D Meyre - BMC medical genomics, 2015 - Springer
Recent advances in high-throughput technologies have led to the emergence of systems
biology as a holistic science to achieve more precise modeling of complex diseases. Many …

NetworkAnalyst for statistical, visual and network-based meta-analysis of gene expression data

J **a, EE Gill, REW Hancock - Nature protocols, 2015 - nature.com
Meta-analysis of gene expression data sets is increasingly performed to help identify robust
molecular signatures and to gain insights into underlying biological processes. The …

Recent advances in proteomics and metabolomics in plants

S Yan, R Bhawal, Z Yin, TW Thannhauser… - Molecular Horticulture, 2022 - Springer
Over the past decade, systems biology and plant-omics have increasingly become the main
stream in plant biology research. New developments in mass spectrometry and …

[HTML][HTML] Pathogenesis and immunobiology of brucellosis: review of Brucella–Host Interactions

P de Figueiredo, TA Ficht, A Rice-Ficht… - The American journal of …, 2015 - Elsevier
This review of Brucella–host interactions and immunobiology discusses recent discoveries
as the basis for pathogenesis-informed rationales to prevent or treat brucellosis. Brucella …

Transcriptome profiling in human diseases: new advances and perspectives

A Casamassimi, A Federico, M Rienzo… - International journal of …, 2017 - mdpi.com
In the last decades, transcriptome profiling has been one of the most utilized approaches to
investigate human diseases at the molecular level. Through expression studies, many …

Microbial resolution of whole genome shotgun and 16S amplicon metagenomic sequencing using publicly available NEON data

KD Brumfield, A Huq, RR Colwell, JL Olds, MB Leddy - PLoS One, 2020 - journals.plos.org
Microorganisms are ubiquitous in the biosphere, playing a crucial role in both
biogeochemistry of the planet and human health. However, identifying these …