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Tutorial: best practices and considerations for mass-spectrometry-based protein biomarker discovery and validation
Mass-spectrometry-based proteomic analysis is a powerful approach for discovering new
disease biomarkers. However, certain critical steps of study design such as cohort selection …
disease biomarkers. However, certain critical steps of study design such as cohort selection …
Biomarkers for wound healing and their evaluation
A biological marker (biomarker) is a substance used as an indicator of biological state.
Advances in genomics, proteomics and molecular pathology have generated many …
Advances in genomics, proteomics and molecular pathology have generated many …
Integrating transcriptome and proteome profiling: Strategies and applications
Discovering the gene expression signature associated with a cellular state is one of the
basic quests in majority of biological studies. For most of the clinical and cellular …
basic quests in majority of biological studies. For most of the clinical and cellular …
Identification of G-quadruplex structures in MALAT1 lncRNA that interact with nucleolin and nucleophosmin
Nuclear-retained long non-coding RNAs (lncRNAs) including MALAT1 have emerged as
critical regulators of many molecular processes including transcription, alternative splicing …
critical regulators of many molecular processes including transcription, alternative splicing …
Plasma/serum proteomics: depletion strategies for reducing high-abundance proteins for biomarker discovery
Plasma and serum are widely used for proteomics-based biomarker discovery. However,
analysis of these biofluids is highly challenging due to the complexity and wide dynamic …
analysis of these biofluids is highly challenging due to the complexity and wide dynamic …
Exploring affinity chromatography in proteomics: a comprehensive review
I Chamrád, R Simerský, R Lenobel, O Novák - Analytica Chimica Acta, 2024 - Elsevier
Over the past decades, the proteomics field has undergone rapid growth. Progress in mass
spectrometry and bioinformatics, together with separation methods, has brought many …
spectrometry and bioinformatics, together with separation methods, has brought many …
Big data, integrative omics and network biology
A cell integrates various signals through a network of biomolecules that crosstalk to
synergistically regulate the replication, transcription, translation and other metabolic …
synergistically regulate the replication, transcription, translation and other metabolic …
False discovery rate: the Achilles' heel of proteogenomics
Proteogenomics refers to the integrated analysis of the genome and proteome that
leverages mass-spectrometry (MS)-based proteomics data to improve genome annotations …
leverages mass-spectrometry (MS)-based proteomics data to improve genome annotations …
[HTML][HTML] Quantification of the N-glycosylated secretome by super-SILAC during breast cancer progression and in human blood samples
PJ Boersema, T Geiger, JR Wiśniewski… - Molecular & cellular …, 2013 - Elsevier
Cells secrete a large number of proteins to communicate with their surroundings.
Furthermore, plasma membrane proteins and intracellular proteins can be released into the …
Furthermore, plasma membrane proteins and intracellular proteins can be released into the …
Integrated plasma proteomics identifies tuberculosis-specific diagnostic biomarkers
BACKGROUND Novel biomarkers to identify infectious patients transmitting Mycobacterium
tuberculosis are urgently needed to control the global tuberculosis (TB) pandemic. We …
tuberculosis are urgently needed to control the global tuberculosis (TB) pandemic. We …