The microbiota of dairy milk: A review

E Parente, A Ricciardi, T Zotta - International Dairy Journal, 2020 - Elsevier
The number of studies using high throughput sequencing (HTS) methods for the
characterisation of microbial communities of milk and dairy products has increased markedly …

[HTML][HTML] Omics-based monitoring of microbial dynamics across the food chain for the improvement of food safety and quality

G Sequino, V Valentino, F Villani… - Food Research …, 2022 - Elsevier
The diffusion of high-throughput sequencing has dramatically changed the study of food
microbial ecology. Amplicon-based description of the microbial community may be routinary …

[HTML][HTML] Amplicon sequencing reveals the bacterial diversity in milk, dairy premises and Serra da Canastra artisanal cheeses produced by three different farms

BA Kamimura, L Cabral, MF Noronha, RC Baptista… - Food …, 2020 - Elsevier
In this work, the amplicon sequencing of the 16 S rRNA gene was employed to investigate
the bacterial diversity in ingredients, processing environment, and ripened cheeses …

High-throughput qPCR and 16S rRNA gene amplicon sequencing as complementary methods for the investigation of the cheese microbiota

M Dreier, M Meola, H Berthoud, N Shani, D Wechsler… - BMC microbiology, 2022 - Springer
Background Next-generation sequencing (NGS) methods and especially 16S rRNA gene
amplicon sequencing have become indispensable tools in microbial ecology. While they …

Effect of lactobacteria on bioactive peptides and their sequence identification in mature cheese

M Kurbanova, R Voroshilin, O Kozlova, V Atuchin - Microorganisms, 2022 - mdpi.com
An in silico study that featured the effect of starter cultures on the bioactivity and other health
benefits of peptides in semi-hard cheese is presented in this contribution. Model Caciotta …

Microbial ecology of Greek wheat sourdoughs, identified by a culture-dependent and a culture-independent approach

MK Syrokou, C Themeli, S Paramithiotis, M Mataragas… - Foods, 2020 - mdpi.com
The aim of the present study was to assess the microecosystem of 13 homemade
spontaneously fermented wheat sourdoughs from different regions of Greece, through the …

Characterizing Halloumi cheese's bacterial communities through metagenomic analysis

E Kamilari, DA Anagnostopoulos, P Papademas… - Lwt, 2020 - Elsevier
Halloumi is a semi-hard cheese produced in Cyprus for centuries and its popularity has
significantly risen over the past years. High-throughput sequencing (HTS) was applied in the …

Effects of phytoremediation treatment on bacterial community structure and diversity in different petroleum-contaminated soils

Y Shen, Y Ji, C Li, P Luo, W Wang, Y Zhang… - International Journal of …, 2018 - mdpi.com
Increased exploitation and use of petroleum resources is leading to increased risk of
petroleum contamination of soil and groundwater. Although phytoremediation is a widely …

High throughput sequencing technologies as a new toolbox for deep analysis, characterization and potentially authentication of protection designation of origin …

E Kamilari, M Tomazou, A Antoniades… - International Journal of …, 2019 - Wiley Online Library
Protected Designation of Origin (PDO) labeling of cheeses has been established by the
European Union (EU) as a quality policy that assures the authenticity of a cheese produced …

Distinct bacterial communities in São Jorge cheese with protected designation of origin (PDO)

MC Coelho, FX Malcata, CCG Silva - Foods, 2023 - mdpi.com
São Jorge cheese is an iconic product of the Azores, produced from raw cow's milk and
natural whey starter (NWS). Although it is produced according to Protected Designation of …