[HTML][HTML] Applications of single-cell and bulk RNA sequencing in onco-immunology

M Kuksin, D Morel, M Aglave, FX Danlos… - European journal of …, 2021 - Elsevier
The rising interest for precise characterization of the tumour immune contexture has recently
brought forward the high potential of RNA sequencing (RNA-seq) in identifying molecular …

TIMER2. 0 for analysis of tumor-infiltrating immune cells

T Li, J Fu, Z Zeng, D Cohen, J Li, Q Chen… - Nucleic acids …, 2020 - academic.oup.com
Tumor progression and the efficacy of immunotherapy are strongly influenced by the
composition and abundance of immune cells in the tumor microenvironment. Due to the …

Local delivery of mRNA-encoded cytokines promotes antitumor immunity and tumor eradication across multiple preclinical tumor models

C Hotz, TR Wagenaar, F Gieseke, DS Bangari… - Science translational …, 2021 - science.org
Local immunotherapy ideally stimulates immune responses against tumors while avoiding
toxicities associated with systemic administration. Current strategies for tumor-targeted …

Targeting the lipid kinase PIKfyve upregulates surface expression of MHC class I to augment cancer immunotherapy

Y Bao, Y Qiao, JE Choi, Y Zhang, R Mannan… - Proceedings of the …, 2023 - pnas.org
Despite the remarkable clinical success of immunotherapies in a subset of cancer patients,
many fail to respond to treatment and exhibit resistance. Here, we found that genetic or …

Next-generation deconvolution of transcriptomic data to investigate the tumor microenvironment

L Merotto, M Zopoglou, C Zackl, F Finotello - International review of cell …, 2024 - Elsevier
Methods for in silico deconvolution of bulk transcriptomics can characterize the cellular
composition of the tumor microenvironment, quantifying the abundance of cell types …

[HTML][HTML] Identification, validation and biological characterisation of novel glioblastoma tumour microenvironment subtypes: implications for precision immunotherapy

K White, K Connor, M Meylan, A Bougoüin… - Annals of …, 2023 - Elsevier
Background New precision medicine therapies are urgently required for glioblastoma
(GBM). However, to date, efforts to subtype patients based on molecular profiles have failed …

Extracellular vimentin mimics VEGF and is a target for anti-angiogenic immunotherapy

JR van Beijnum, EJM Huijbers, K van Loon… - Nature …, 2022 - nature.com
Anti-angiogenic cancer therapies possess immune-stimulatory properties by counteracting
pro-angiogenic molecular mechanisms. We report that tumor endothelial cells ubiquitously …

TISMO: syngeneic mouse tumor database to model tumor immunity and immunotherapy response

Z Zeng, CJ Wong, L Yang, N Ouardaoui… - Nucleic acids …, 2022 - academic.oup.com
Syngeneic mouse models are tumors derived from murine cancer cells engrafted on
genetically identical mouse strains. They are widely used tools for studying tumor immunity …

Obesogenic high-fat diet and MYC cooperate to promote lactate accumulation and tumor microenvironment remodeling in prostate cancer

N Boufaied, P Chetta, T Hallal, S Cacciatore… - Cancer …, 2024 - aacrjournals.org
Cancer cells exhibit metabolic plasticity to meet oncogene-driven dependencies while
co** with nutrient availability. A better understanding of how systemic metabolism impacts …

GM-CSF drives myelopoiesis, recruitment and polarisation of tumour-associated macrophages in cholangiocarcinoma and systemic blockade facilitates antitumour …

LI Ruffolo, KM Jackson, PC Kuhlers, BS Dale… - Gut, 2022 - gut.bmj.com
Objective Intrahepatic cholangiocarcinoma (iCCA) is rising in incidence, and at present,
there are limited effective systemic therapies. iCCA tumours are infiltrated by stromal cells …