[HTML][HTML] De-centralizing the Central Dogma: mRNA translation in space and time

AM Bourke, A Schwarz, EM Schuman - Molecular Cell, 2023 - cell.com
As our understanding of the cell interior has grown, we have come to appreciate that most
cellular operations are localized, that is, they occur at discrete and identifiable locations or …

Molecular spatiomics by proximity labeling

MG Kang, HW Rhee - Accounts of Chemical Research, 2022 - ACS Publications
Conspectus Proximity labeling can be defined as an enzymatic “in-cell” chemical reaction
that catalyzes the proximity-dependent modification of biomolecules in live cells. Since the …

System-wide analysis of RNA and protein subcellular localization dynamics

E Villanueva, T Smith, M Pizzinga, M Elzek… - Nature …, 2024 - nature.com
Although the subcellular dynamics of RNA and proteins are key determinants of cell
homeostasis, their characterization is still challenging. Here we present an integrative …

Bioorthogonal masked acylating agents for proximity-dependent RNA labelling

S Pani, T Qiu, K Kentala, SA Azizi, BC Dickinson - Nature Chemistry, 2024 - nature.com
RNA localization is highly regulated, with subcellular organization driving context-
dependent cell physiology. Although proximity-based labelling technologies that use highly …

Spatial omics advances for in situ RNA biology

J Ren, S Luo, H Shi, X Wang - Molecular Cell, 2024 - cell.com
Spatial regulation of RNA plays a critical role in gene expression regulation and cellular
function. Understanding spatially resolved RNA dynamics and translation is vital for bringing …

Targeted Covalent Modification Strategies for Drugging the Undruggable Targets

T Tamura, M Kawano, I Hamachi - Chemical Reviews, 2025 - ACS Publications
The term “undruggable” refers to proteins or other biological targets that have been
historically challenging to target with conventional drugs or therapeutic strategies because …

Creative approaches using proximity labeling to gain new biological insights

RR Milione, BB Schell, CJ Douglas… - Trends in Biochemical …, 2024 - cell.com
At its most fundamental level, life is a collection of synchronized cellular processes driven by
interactions among biomolecules. Proximity labeling has emerged as a powerful technique …

The role of alternative polyadenylation in the regulation of subcellular RNA localization

A Arora, R Goering, HYG Lo, J Lo, C Moffatt… - Frontiers in …, 2022 - frontiersin.org
Alternative polyadenylation (APA) is a widespread and conserved regulatory mechanism
that generates diverse 3′ ends on mRNA. APA patterns are often tissue specific and play …

Causes, functions, and therapeutic possibilities of RNA secondary structure ensembles and alternative states

R Bose, I Saleem, AM Mustoe - Cell Chemical Biology, 2024 - cell.com
RNA secondary structure plays essential roles in encoding RNA regulatory fate and function.
Most RNAs populate ensembles of alternatively paired states and are continually unfolded …

Proximitomics by reactive species

S Zhang, Q Tang, X Zhang, X Chen - ACS Central Science, 2024 - ACS Publications
The proximitome is defined as the entire collection of biomolecules spatially in the proximity
of a biomolecule of interest. More broadly, the concept of the proximitome can be extended …