cp2k: atomistic simulations of condensed matter systems
cp2k has become a versatile open‐source tool for the simulation of complex systems on the
nanometer scale. It allows for sampling and exploring potential energy surfaces that can be …
nanometer scale. It allows for sampling and exploring potential energy surfaces that can be …
Progress in Ab Initio QM/MM Free-Energy Simulations of Electrostatic Energies in Proteins: Accelerated QM/MM Studies of pKa, Redox Reactions and Solvation …
Hybrid quantum mechanical/molecular mechanical (QM/MM) approaches have been used
to provide a general scheme for chemical reactions in proteins. However, such approaches …
to provide a general scheme for chemical reactions in proteins. However, such approaches …
Metadynamics: a method to simulate rare events and reconstruct the free energy in biophysics, chemistry and material science
Metadynamics is a powerful algorithm that can be used both for reconstructing the free
energy and for accelerating rare events in systems described by complex Hamiltonians, at …
energy and for accelerating rare events in systems described by complex Hamiltonians, at …
We Already Know Everything about Oxidative Addition to Pd (0): Do We?
The oxidative addition (OA) of organic electrophiles to Pd (0) is a fundamental step in
organopalladium chemistry and plays a key role in palladium-catalyzed cross-coupling …
organopalladium chemistry and plays a key role in palladium-catalyzed cross-coupling …
Reactivity of shape-controlled crystals and metadynamics simulations locate the weak spots of alumina in water
The kinetic stability of any material in water relies on the presence of surface weak spots
responsible for chemical weathering by hydrolysis. Being able to identify the atomistic nature …
responsible for chemical weathering by hydrolysis. Being able to identify the atomistic nature …
Real-world predictions from ab initio molecular dynamics simulations
In this review we present the techniques of ab initio molecular dynamics simulation
improved to its current stage where the analysis of existing processes and the prediction of …
improved to its current stage where the analysis of existing processes and the prediction of …
Paradynamics: an effective and reliable model for ab initio QM/MM free-energy calculations and related tasks
Recent years have seen tremendous effort in the development of approaches with which to
obtain quantum mechanics/molecular mechanics (QM/MM) free energies for reactions in the …
obtain quantum mechanics/molecular mechanics (QM/MM) free energies for reactions in the …
Protein flexibility and ligand recognition: challenges for molecular modeling
The intrinsic dynamics of macromolecules is an essential property to relate the structure of
biomolecular systems with their function in the cell. In the field of ligand-receptor recognition …
biomolecular systems with their function in the cell. In the field of ligand-receptor recognition …
Experimental and computational studies of high-valent nickel and palladium complexes
NM Camasso, AJ Canty, A Ariafard… - Organometallics, 2017 - ACS Publications
This article describes a detailed comparison of the organometallic chemistry of high-valent
nickel and palladium model complexes supported by tris (pyrazolyl) borate and …
nickel and palladium model complexes supported by tris (pyrazolyl) borate and …
Reductive elimination and dissociative β-hydride abstraction from Pt (IV) hydroxide and methoxide complexes
NA Smythe, KA Grice, BS Williams, KI Goldberg - Organometallics, 2009 - ACS Publications
The platinum (IV) hydroxide and methoxide complexes fac-(dppbz) PtMe3 (OR)(dppbz= o-
bis (diphenylphosphino) benzene; R= H (1), CH3 (2)) have been prepared and …
bis (diphenylphosphino) benzene; R= H (1), CH3 (2)) have been prepared and …