[HTML][HTML] An overview of bioinformatics tools for epitope prediction: implications on vaccine development

RE Soria-Guerra, R Nieto-Gomez… - Journal of biomedical …, 2015‏ - Elsevier
Exploitation of recombinant DNA and sequencing technologies has led to a new concept in
vaccination in which isolated epitopes, capable of stimulating a specific immune response …

MHC ligands and peptide motifs: first listing

HG Rammensee, T Friede, S Stevanović - Immunogenetics, 1995‏ - Springer
The purpose of this article is to provide a compendium of major histocompatibility complex
(MHC) peptide motifs and MHC ligands known to date, together with a discussion of the …

Selective glutamine metabolism inhibition in tumor cells improves antitumor T lymphocyte activity in triple-negative breast cancer

DN Edwards, VM Ngwa, AL Raybuck… - The Journal of …, 2021‏ - Am Soc Clin Investig
Rapidly proliferating tumor and immune cells need metabolic programs that support energy
and biomass production. The amino acid glutamine is consumed by effector T cells and …

Dendrimer-RNA nanoparticles generate protective immunity against lethal Ebola, H1N1 influenza, and Toxoplasma gondii challenges with a single dose

JS Chahal, OF Khan, CL Cooper… - Proceedings of the …, 2016‏ - National Acad Sciences
Vaccines have had broad medical impact, but existing vaccine technologies and production
methods are limited in their ability to respond rapidly to evolving and emerging pathogens …

Modulation of microenvironment acidity reverses anergy in human and murine tumor-infiltrating T lymphocytes

A Calcinotto, P Filipazzi, M Grioni, M Iero, A De Milito… - Cancer research, 2012‏ - AACR
Stimulating the effector functions of tumor-infiltrating T lymphocytes (TIL) in primary and
metastatic tumors could improve active and adoptive T-cell therapies for cancer. Abnormal …

Reliable prediction of T‐cell epitopes using neural networks with novel sequence representations

M Nielsen, C Lundegaard, P Worning… - Protein …, 2003‏ - Wiley Online Library
In this paper we describe an improved neural network method to predict T‐cell class I
epitopes. A novel input representation has been developed consisting of a combination of …

Development of a cancer vaccine using in vivo click‐chemistry‐mediated active lymph node accumulation for improved immunotherapy

H Qin, R Zhao, Y Qin, J Zhu, L Chen, C Di… - Advanced …, 2021‏ - Wiley Online Library
Due to their ability to elicit a potent immune reaction with low systemic toxicity, cancer
vaccines represent a promising strategy for treating tumors. Considerable effort has been …

Dendritic cells pulsed with RNA are potent antigen-presenting cells in vitro and in vivo.

D Boczkowski, SK Nair, D Snyder… - The Journal of …, 1996‏ - rupress.org
Immunization with defined tumor antigens is currently limited to a small number of cancers
where candidates for tumor rejection antigens have been identified. In this study we …

Computational prediction of proteotypic peptides for quantitative proteomics

P Mallick, M Schirle, SS Chen, MR Flory, H Lee… - Nature …, 2007‏ - nature.com
Mass spectrometry–based quantitative proteomics has become an important component of
biological and clinical research. Although such analyses typically assume that a protein's …

Vaxign: the first web‐based vaccine design program for reverse vaccinology and applications for vaccine development

Y He, Z **ang, HLT Mobley - BioMed Research International, 2010‏ - Wiley Online Library
Vaxign is the first web‐based vaccine design system that predicts vaccine targets based on
genome sequences using the strategy of reverse vaccinology. Predicted features in the …